Skip to content
@BIMSBbioinfo

BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

Popular repositories Loading

  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 256 34

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 74 22

  3. compgen2021 compgen2021 Public

    R 73 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 49 21

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 45 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 43 10

Repositories

Showing 10 of 106 repositories
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 43 10 2 0 Updated Dec 30, 2024
  • compgen Public
    BIMSBbioinfo/compgen’s past year of commit activity
    0 1 0 0 Updated Dec 28, 2024
  • pigx_rnaseq Public

    Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

    BIMSBbioinfo/pigx_rnaseq’s past year of commit activity
    Python 21 GPL-3.0 12 22 0 Updated Dec 27, 2024
  • oncotrialLLM Public
    BIMSBbioinfo/oncotrialLLM’s past year of commit activity
    Python 1 0 0 0 Updated Dec 26, 2024
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 25 4 11 1 Updated Dec 25, 2024
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Dec 24, 2024
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 1 1 2 0 Updated Dec 19, 2024
  • ZarrDataFrame Public
    BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 15, 2024
  • ZarrArray Public

    Zarr backend for DelayedArray objects

    BIMSBbioinfo/ZarrArray’s past year of commit activity
    R 2 1 3 0 Updated Dec 15, 2024
  • tibanna-bimsb Public Forked from 4dn-dcic/tibanna

    Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

    BIMSBbioinfo/tibanna-bimsb’s past year of commit activity
    Python 0 MIT 28 0 0 Updated Dec 5, 2024

Top languages

Loading…

Most used topics

Loading…