Deploying to gh-pages from @ 36b0a25 🚀

latest/_modules/index.html

@@ -78,13 +78,16 @@ <h1>All modules for which code is available</h1>
 <li><a href="rarelink_phenopacket_mapper/data_standards/code.html">rarelink_phenopacket_mapper.data_standards.code</a></li>
 <li><a href="rarelink_phenopacket_mapper/data_standards/code_system.html">rarelink_phenopacket_mapper.data_standards.code_system</a></li>
 <li><a href="rarelink_phenopacket_mapper/data_standards/data_model.html">rarelink_phenopacket_mapper.data_standards.data_model</a></li>
-<li><a href="rarelink_phenopacket_mapper/data_standards/data_models/data_type_string_representation.html">rarelink_phenopacket_mapper.data_standards.data_models.data_type_string_representation</a></li>
 <li><a href="rarelink_phenopacket_mapper/data_standards/date.html">rarelink_phenopacket_mapper.data_standards.date</a></li>
 <li><a href="rarelink_phenopacket_mapper/pipeline/input.html">rarelink_phenopacket_mapper.pipeline.input</a></li>
 <li><a href="rarelink_phenopacket_mapper/pipeline/mapper.html">rarelink_phenopacket_mapper.pipeline.mapper</a></li>
 <li><a href="rarelink_phenopacket_mapper/pipeline/output.html">rarelink_phenopacket_mapper.pipeline.output</a></li>
 <li><a href="rarelink_phenopacket_mapper/pipeline/validate.html">rarelink_phenopacket_mapper.pipeline.validate</a></li>
 <li><a href="rarelink_phenopacket_mapper/utils/create_ipynb_in_code.html">rarelink_phenopacket_mapper.utils.create_ipynb_in_code</a></li>
+<li><a href="rarelink_phenopacket_mapper/utils/get_field_name.html">rarelink_phenopacket_mapper.utils.get_field_name</a></li>
+<li><a href="rarelink_phenopacket_mapper/utils/pandas_utils.html">rarelink_phenopacket_mapper.utils.pandas_utils</a></li>
+<li><a href="rarelink_phenopacket_mapper/utils/parsing/parse_data_type.html">rarelink_phenopacket_mapper.utils.parsing.parse_data_type</a></li>
+<li><a href="rarelink_phenopacket_mapper/utils/parsing/parse_ordinal.html">rarelink_phenopacket_mapper.utils.parsing.parse_ordinal</a></li>
 </ul>
 
            </div>

latest/_modules/rarelink_phenopacket_mapper/data_standards/data_model.html

@@ -93,8 +93,8 @@ <h1>Source code for rarelink_phenopacket_mapper.data_standards.data_model</h1><d
 
     <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="n">ret</span> <span class="o">=</span> <span class="s2">&quot;DataField(</span><span class="se">\n</span><span class="s2">&quot;</span>
-        <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">ordinal, section=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">ordinal</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">section</span><span class="si">}</span><span class="s2">,</span><span class="se">\n</span><span class="s2">&quot;</span>
-        <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">name=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2">,</span><span class="se">\n</span><span class="s2">&quot;</span>
+        <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">section=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">section</span><span class="si">}</span><span class="s2">,</span><span class="se">\n</span><span class="s2">&quot;</span>
+        <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">ordinal and name=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">ordinal</span><span class="si">}</span><span class="s2">  </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2">,</span><span class="se">\n</span><span class="s2">&quot;</span>
         <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">data type=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">data_type</span><span class="si">}</span><span class="s2">, required=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">required</span><span class="si">}</span><span class="s2">,</span><span class="se">\n</span><span class="s2">&quot;</span>
         <span class="n">ret</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="se">\t\t</span><span class="s2">sepcification=</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">specification</span><span class="si">}</span><span class="se">\n</span><span class="s2">&quot;</span>
         <span class="n">ret</span> <span class="o">+=</span> <span class="s2">&quot;</span><span class="se">\t</span><span class="s2">)&quot;</span>