1.5.3

Bug fixes and minor enhancements.

• Changes to support case insensitive fields
• fixes for running duplicate detection & code clean up
• changed Store.loadRecord API to return full record
• fix for indexing problem and images
• extracted out dataresourceconfig object
• added MaterialSample and other formats as a basis of record - required for tissue records to be differentiated from preserved specimen records they are sourced from
• Fix get qid when bbox is null
• support for vernacular names
• loading from taxon profile (reverted)
• loading from name index if available
• clean up of assertion status codes
• fixes for species groups, config national IDs
• comma separated list support for loading
• changes to support refreshing of image metadata

1.5.2

Bug fix release - SDS fixes

1.5.1

Bug fix release for 1.5

1.5

DwC-A image extension support

1.4.1

A bug release. Main fix is parsing of GBIF basis of record values.

1.4

• 92b8a9d ingest skip stages options (@djtfmartin)
• 4a12610 doco for cmd tool (@djtfmartin)
• 9c24e7c log indexing errors and continue (@djtfmartin)
• afb2612 gbif dwca fix (@djtfmartin)
• 127b203 CSV export on index sensitive (@adam-collins)
• 9f1df9e Pipeline delimited recordedBy values fixed. (@sadeghim)
• df9cfac set the occurrenceID (@djtfmartin)
• bcde105 recognise image service URLs and act appropriately (@djtfmartin)
• 4d94298 catch JSON parse errors with outlierForLayers.p (@adam-collins)
• d022861 CSV export on index sensitive (@adam-collins)
• a6dc107 CSV export on index missing newline (@adam-collins)
• 98d2e11 Separate CSV export on index for sensitive (@adam-collins)
• 4986928 Fix for missing parameter additional.fields.to.index (@adam-collins)
• 9665417 Add index on point-0.02 (@adam-collins)
• f95c4a1 The method readAsCSV was not looping over the rows. (@sadeghim)
• 1e9f74b Was returning no result ora result without any columns. First parameter is the starting column name which should have been passed as "rowKey". EMPTY works for now. (@sadeghim)
• 222692b Update layer defaults. (@adam-collins)
• 5d89d87 remove caching of sampling fields (@adam-collins)
• bba4766 ignore target directory (@djtfmartin)
• 8ecc255 additional field mapping (@djtfmartin)
• 6806934 support for pipe delimited associatedMedia string (@djtfmartin)
• 1cafa26 code formatting (@djtfmartin)
• 762de37 removed addRaw (@djtfmartin)
• 18c6450 MD5 hashing of image file names (@djtfmartin)
• 8f3b331 EOL fixes (@djtfmartin)
• 6a30d1f prototype loader of EOL images (@djtfmartin)
• c5608a9 exception handling in date parsing (@djtfmartin)

1.3

• additional support for retrieve geotags for flickr
• conditional log warning for sampling
• only log warning if there are a set of fields to sample
• use country code to resolve country where nothing else available
• reduced memory - no longer sampling locally
• loader exception handling
• now using ConcurrentUpdateSolrServer for updates to SOLR
• load all resources option
• bulk loading
• Added ala parent pom reference
• Removed unnecessary repository references inside pom
• Added exclusions to gitignore file
• groovy script for cleaning up directories
• blacklisted URLs
• additional options for column export - specify column separator and row
• bug fix for empty rows - this was causing the /occurrences/deleted
• service to fail with ArrayOutOfBoundsExceptions
• Add sampling progress feedback
• another fix for remote sampling
• sampling fix and cleanup
• check for non-numeric value
• remote sampling fix
• version info in built jar - now compatible with travis builds
• updated maven repository credentials
• distributionManagement
• skip tests for now
• isLoadable
• sensitive test fixes - cat1 tests added but commented out
• abort if row key file not there
• removed dynamic layer lookup
• using a different plugin to generate git information
• additional date format support
• species subgroup config URL
• service exposing species subgroup config URL
• export util includeRowKey = false
• use the supplied number of threads
• added an additional repo in attempt to fix travis build
• fix for biocache load dir paths
• Occurrence status and missing description
• bumped minor scala version
• code cleanup
• occurrence status processing
• processing of occurrence status
• formatting
• code formatting
• externally configurable species groups
• not a type
• refactoring of media downloads
• added missing flush which was causing the export to be truncated
• Merge remote-tracking branch 'origin/master'
• added travis build status
• Prevent DigiVol ingestion from creating a data set if the guid is null
• added a travis profile to skip the git-commit step which is problematic for travis
• Prevent DigiVol ingestion from creating data sets if the guid (project home page url) is empty or null
• unique set of load, processed and QA dates
• cmd tool to retrieve human readable timestamps for fields for debugging
• load currency
• removed gzip zip which was broken
• reverted git-commit version bump - verifyerrors
• code cleanup, formatting and logging fixes, removal of redundant code
• cleanup of boolean cmd args
• delete by file of UUIDs
• problematic when data has not been provided in utf8
• cleanup of boolean cmd args so that there isn’t a need to specify a
• removed redundant plugin
• bumped up the version of the maven git-commit plugin
• changes to keep up with BVP web service changes
• fixes for downloading media
• Comma separated values in associatedMedia
• Support for comma separated values in associatedMedia needed for
• iNaturalist
• Minor readme changes
• javadoccing and code style in an attempt to make the code more readable
• formatting and typos
• removed unused imports
• Range deletor for deleting records by a start and end key range
• code readability
• javadocc-ing of duplicate detection and code cleanup - more to be done
• code formatting and cleanup
• code formatting to comply with code standards and cleanup
• support export by key range
• support CSV export by key range
• order config properties
• order config properties lexicographically in “biocache config” command
• reverted changes of bad commit
• dont include the rowkey in the DWCA export
• Readme fixes for name index information
• data loader handling of empty unique terms
• data loader handling of data resources with an empty list of unique
• markdown for code

1.2

• reindexing fixes
• fixes to test
• lucene indexes
• changes to allow compiling with java 6
• distribution package changes
• this will be manipulated by ansible scripts to create an executable jar
• Git version information for command line tools
• added the ability to override vocabulary files with files external to built executables
• change SCM config to Git
• removal of println, and obsolete imports
• fixes to make media loading more robust, and changes to duplicate detection to avoid JSON serialisation problems
• full file extraction with support for Zips with subdirectories (required for GBIF archive loading)
• bvp hub update of data resources
• removed old sandbox code to reduce confusion
• jackson update
• jacknife fix
• BVP data harvesting support
• typo in log statement
• case insensitive check
• fixes for sounds files
• remote media store support
• resampling support
• split index merge into separate tool
• enhancements for a more executable biocache package - still requiring a maven job to package final executable

1.1

• changes for release management
• Copy new package structure
• committed after review
• Fix for Embedded Solr Server
• build fix
• added patches from r4273
• removed println from tests
• remove println
• doco and minor fixes for consistency
• fixes for package path
• reorganisation of packages