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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<title>STMP Visualizer</title>
<!-- Our CSS -->
<link rel="stylesheet" href="css/main.css">
<!-- Bootstrap core CSS -->
<link href="vendor/bootstrap/css/bootstrap.min.css" rel="stylesheet">
<!-- Custom fonts for this template -->
<link href="vendor/font-awesome/css/font-awesome.min.css" rel="stylesheet" type="text/css">
<link href='https://fonts.googleapis.com/css?family=Open+Sans:300italic,400italic,600italic,700italic,800italic,400,300,600,700,800' rel='stylesheet' type='text/css'>
<link href='https://fonts.googleapis.com/css?family=Merriweather:400,300,300italic,400italic,700,700italic,900,900italic' rel='stylesheet' type='text/css'>
<!-- Plugin CSS -->
<link href="vendor/magnific-popup/magnific-popup.css" rel="stylesheet">
<!-- Custom styles for this template -->
<link href="css/creative.css" rel="stylesheet">
<!-- Temporary navbar container fix -->
<style>
.navbar-toggler {
z-index: 1;
}
@media (max-width: 576px) {
nav > .container {
width: 100%;
}
}
</style>
</head>
<body id="page-top">
<!-- Navigation -->
<nav class="navbar fixed-top navbar-toggleable-md navbar-light" id="mainNav">
<button class="navbar-toggler navbar-toggler-right" type="button" data-toggle="collapse" data-target="#navbarExample" aria-controls="navbarExample" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="container">
<a class="navbar-brand" href="#page-top">STMP Visualizer</a>
<div class="collapse navbar-collapse" id="navbarExample">
<ul class="navbar-nav ml-auto">
<li class="nav-item">
<a class="nav-link" href="#footer">About</a>
</li>
</ul>
</div>
</div>
</nav>
<header class="masthead">
<div class="header-content">
<div class="header-content-inner">
<h1 id="homeHeading">Visualize Genomic Data</h1>
<hr>
<div id="inputOrSpinner">
<div id="inputContainer">
<p>Any spreadsheets submitted through the orange button the site are secure. The variant data is processed entirely on your computer—it’d be the same as downloading the code and running on it your computer—you could even do it without an Internet connection. There’s no communication of any kind of participant information between your computer and any server.</p>
<input id="uploadInput" type="file">
<a id="uploadLink" class="btn btn-primary btn-xl">SELECT AN XLSX</a>
<a id="fullscreenLink" class="btn btn-primary btn-xl">FS</a>
</div>
<div id="spinnerContainer" class="lds-css ng-scope">
<div style="width:100%;height:100%" class="lds-ellipsis">
<div>
<div></div>
</div>
<div>
<div></div>
</div>
<div>
<div></div>
</div>
<div>
<div></div>
</div>
<div>
<div></div>
</div>
</div>
</div>
</div>
</div>
</div>
</header>
<section class="bg-primary" id="visualizer">
<div id="graphics">
<div class="splitContainer">
<div class="leftSplit">
<span id="visualizationTitle"></span>
</div>
<div class="rightSplit">
<img id="gear" src="img/gear.png">
</div>
</div>
<span id="masterText"></span>
</div>
</section>
<div id="footer" class="call-to-action bg-dark">
<div class="container text-center">
<h5>Made by Charlie Curnin and Noah Friedman, Matthew Wheeler, Undiagnosed Diseases Network, Ashley Lab, Stanford University School of Medicine.</h5>
<h6>© 2017</h6>
</div>
</div>
<!-- Bootstrap core JavaScript -->
<script src="vendor/jquery/jquery.min.js"></script>
<script src="vendor/tether/tether.min.js"></script>
<script src="vendor/bootstrap/js/bootstrap.min.js"></script>
<!-- jQuery UI -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.js"></script>
<link rel="stylesheet" href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css">
<!-- Plugin JavaScript -->
<script src="vendor/jquery-easing/jquery.easing.min.js"></script>
<script src="vendor/scrollreveal/scrollreveal.min.js"></script>
<script src="vendor/magnific-popup/jquery.magnific-popup.min.js"></script>
<!-- Custom scripts for this template -->
<script src="js/creative.min.js"></script>
<script src="vendor/js-xlsx-master/dist/xlsx.full.min.js"></script>
<script src="vendor/FileSaver.js-master/FileSaver.min.js"></script>
<!-- d3.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/4.10.0/d3.js"></script>
<script src="https://d3js.org/d3-scale-chromatic.v1.min.js"></script>
<!-- RadarChart -->
<script src="RadarChart.js"></script>
<!-- StarPlot -->
<script src="StarPlot.js"></script>
<!-- Our JS -->
<script src="links.js"></script>
<script src="preferences.js"></script>
<script src="pedigree.js"></script>
<script src="barchart.js"></script>
<script src="karyotype.js"></script>
<script src="getCytobandData.js"></script>
<script src="karyotype.js"></script>
<script src="parser.js"></script>
<script src="radar.js"></script>
<script src="spiralgram.js"></script>
<script src="staff.js"></script>
<script src="streamgraph.js"></script>
<script src="visualizer.js"></script>
<script src="downloader.js"></script>
<script src="tools.js"></script>
</body>
</html>