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33 Open 95 Closed
33 Open 95 Closed
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Issues list

Why some specified "nrom_cells" were classified as tumor cells?
#129 opened Dec 13, 2024 by Zjianglin
Error during multiSampleComparisonClonalCN
#128 opened Dec 6, 2024 by RafaellaFerraz
What is the maximum number of cells?
#127 opened Nov 29, 2024 by amingson
Adding a new organism? (Zebrafish)
#126 opened Nov 15, 2024 by alexwskh
No tumor cell found in output but tumor cell reported in log
#125 opened Oct 20, 2024 by chenhong-dkfz
Allow precomputed baseline for single sample pipeline
#124 opened Sep 30, 2024 by wudustan
4
Error in iteration 2: arguments imply differing number of rows
#119 opened Aug 8, 2024 by royfrancis
2
multiSampleComparisonClonalCN Error in vegaMC_R(mtx = mtx, output_file_name = paste("./output/", sample, : NA/NaN/Inf in foreign function call (arg 1)
#117 opened Jul 4, 2024 by Prakrithi-P
1
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 6435, 5148
#115 opened Jun 21, 2024 by Ahmed-Ghobashi
7
Error in [.data.frame(res_class$CNAmat, , res_class$tum_cells) : undefined columns selected
#97 opened Dec 13, 2023 by DGladish
1
Error in analysis of an epithelial cluster
#96 opened Dec 12, 2023 by andrianamanousidaki
Is there a maximum of subclones?
#93 opened Nov 27, 2023 by augjensen
2
Normalization?
#91 opened Nov 16, 2023 by DGladish
2
Compare CNV profiles across many patients
#89 opened Oct 30, 2023 by augjensen
2
Copy Number with Decimals?
#88 opened Oct 26, 2023 by dchavre
How to find CN for a cell (using data from heatmap)
#87 opened Oct 26, 2023 by dchavre
Figure format enhancement New feature or request
#78 opened Sep 26, 2023 by wbf520qcp
@AntonioDeFalco
Error at oncoHeat step for subclones
#74 opened Sep 14, 2023 by smdn-tt
1
Error in hclust(parallelDist::parDist(t(CNA_mtx), threads = par_cores, : size cannot be NA nor exceed 65536
#69 opened Jun 21, 2023 by Ilarius
7
T-cell recognized as tumor cells
#68 opened Jun 16, 2023 by oandrefonseca
4
The number of elements of the gene set is less than the minimum allowed.
#67 opened Jun 15, 2023 by pgm99
8
Error in step 9 and step 11
#66 opened Jun 15, 2023 by 39652its
3
Heatmap values ordered by cluster enhancement New feature or request
#64 opened May 2, 2023 by karlacat1
1
count_mtx choose for integrated Seurat object data
#61 opened Apr 23, 2023 by Lawwwwo
1
The fibroblast, EC, and myofibroblasts were also identified as tumor. What are the reasons for this result?
#60 opened Apr 12, 2023 by gloriafight
4
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