Bookmark "conflicts" refer to completely different bookmarks

[GregWoods]

The example image shows two very different bookmarks shown as a conflict.
I am assuming that in the backup files they share an ID of some sort, but from a users perspective, if they refer to different publications or location in a publication, they are independent and should not be in conflict.

[Drizztfire]

As you said it's a conflict for a backup slot in pubID :98 (Bible)
Since there's only 10 slots for bookmarks this is normal to have conflicts.
Your conflict is for slot 0 : the first one. In one backup Ecc 6:5 is bookmarked there and in the other it's Prov 12:14