methylation_env.yml

name: methylation
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - _r-mutex=1.0.1
  - alsa-lib=1.2.10
  - argcomplete=3.1.6
  - attr=2.5.1
  - aws-c-auth=0.7.7
  - aws-c-cal=0.6.9
  - aws-c-common=0.9.8
  - aws-c-compression=0.2.17
  - aws-c-event-stream=0.3.2
  - aws-c-http=0.7.14
  - aws-c-io=0.13.36
  - aws-c-mqtt=0.9.10
  - aws-c-s3=0.4.1
  - aws-c-sdkutils=0.1.12
  - aws-checksums=0.1.17
  - aws-crt-cpp=0.24.7
  - aws-sdk-cpp=1.11.182
  - bedops=2.4.41
  - bedtools=2.31.1
  - binutils_impl_linux-64=2.40
  - bioconductor-annotationdbi=1.62.2
  - bioconductor-annotationhub=3.8.0
  - bioconductor-annotatr=1.26.0
  - bioconductor-biobase=2.60.0
  - bioconductor-biocfilecache=2.8.0
  - bioconductor-biocgenerics=0.46.0
  - bioconductor-biocio=1.10.0
  - bioconductor-biocparallel=1.34.2
  - bioconductor-biocversion=3.17.1
  - bioconductor-biomart=2.56.1
  - bioconductor-biostrings=2.68.1
  - bioconductor-bsgenome=1.68.0
  - bioconductor-data-packages=20231203
  - bioconductor-delayedarray=0.26.6
  - bioconductor-genomeinfodb=1.36.1
  - bioconductor-genomeinfodbdata=1.2.11
  - bioconductor-genomicalignments=1.36.0
  - bioconductor-genomicfeatures=1.52.1
  - bioconductor-genomicranges=1.52.0
  - bioconductor-interactivedisplaybase=1.38.0
  - bioconductor-iranges=2.34.1
  - bioconductor-keggrest=1.40.0
  - bioconductor-matrixgenerics=1.12.2
  - bioconductor-org.hs.eg.db=3.17.0
  - bioconductor-regioner=1.32.0
  - bioconductor-rhtslib=2.2.0
  - bioconductor-rsamtools=2.16.0
  - bioconductor-rtracklayer=1.60.0
  - bioconductor-s4arrays=1.0.4
  - bioconductor-s4vectors=0.38.1
  - bioconductor-summarizedexperiment=1.30.2
  - bioconductor-txdb.hsapiens.ucsc.hg38.knowngene=3.17.0
  - bioconductor-xvector=0.40.0
  - bioconductor-zlibbioc=1.46.0
  - blosc=1.21.5
  - brotli=1.1.0
  - brotli-bin=1.1.0
  - brotli-python=1.1.0
  - bwidget=1.9.14
  - bzip2=1.0.8
  - c-ares=1.22.1
  - ca-certificates=2024.3.11
  - cairo=1.18.0
  - certifi=2024.2.2
  - cfitsio=4.3.0
  - charset-normalizer=3.3.2
  - contourpy=1.2.0
  - curl=8.4.0
  - cycler=0.12.1
  - dbus=1.13.6
  - expat=2.5.0
  - font-ttf-dejavu-sans-mono=2.37
  - font-ttf-inconsolata=3.000
  - font-ttf-source-code-pro=2.038
  - font-ttf-ubuntu=0.83
  - fontconfig=2.14.2
  - fonts-conda-ecosystem=1
  - fonts-conda-forge=1
  - fonttools=4.45.1
  - freetype=2.12.1
  - freexl=2.0.0
  - fribidi=1.0.10
  - gcc_impl_linux-64=13.2.0
  - geos=3.12.1
  - geotiff=1.7.1
  - gettext=0.21.1
  - gflags=2.2.2
  - gfortran_impl_linux-64=13.2.0
  - giflib=5.2.1
  - glib=2.78.1
  - glib-tools=2.78.1
  - glog=0.6.0
  - gmp=6.3.0
  - gprofiler-official=1.0.0
  - graphite2=1.3.13
  - gst-plugins-base=1.22.7
  - gstreamer=1.22.7
  - gxx_impl_linux-64=13.2.0
  - harfbuzz=8.3.0
  - hdf4=4.2.15
  - hdf5=1.14.2
  - htslib=1.18
  - icu=73.2
  - idna=3.6
  - jq=1.5
  - json-c=0.17
  - kealib=1.5.2
  - kernel-headers_linux-64=2.6.32
  - keyutils=1.6.1
  - kiwisolver=1.4.5
  - krb5=1.21.2
  - lame=3.100
  - lcms2=2.15
  - ld_impl_linux-64=2.40
  - lerc=4.0.0
  - libabseil=20230802.1
  - libaec=1.1.2
  - libarchive=3.7.2
  - libarrow=14.0.1
  - libarrow-acero=14.0.1
  - libarrow-dataset=14.0.1
  - libarrow-substrait=14.0.1
  - libbigwig=0.4.7
  - libblas=3.9.0
  - libboost-headers=1.83.0
  - libbrotlicommon=1.1.0
  - libbrotlidec=1.1.0
  - libbrotlienc=1.1.0
  - libcap=2.69
  - libcblas=3.9.0
  - libclang=15.0.7
  - libclang13=15.0.7
  - libcrc32c=1.1.2
  - libcups=2.3.3
  - libcurl=8.4.0
  - libdeflate=1.19
  - libedit=3.1.20191231
  - libev=4.33
  - libevent=2.1.12
  - libexpat=2.5.0
  - libffi=3.4.2
  - libflac=1.4.3
  - libgcc=7.2.0
  - libgcc-devel_linux-64=13.2.0
  - libgcc-ng=13.2.0
  - libgcrypt=1.10.2
  - libgdal=3.8.0
  - libgfortran-ng=13.2.0
  - libgfortran5=13.2.0
  - libglib=2.78.1
  - libgomp=13.2.0
  - libgoogle-cloud=2.12.0
  - libgpg-error=1.47
  - libgrpc=1.59.3
  - libiconv=1.17
  - libjpeg-turbo=3.0.0
  - libkml=1.3.0
  - liblapack=3.9.0
  - libllvm15=15.0.7
  - libnetcdf=4.9.2
  - libnghttp2=1.58.0
  - libnsl=2.0.1
  - libogg=1.3.4
  - libopenblas=0.3.25
  - libopus=1.3.1
  - libparquet=14.0.1
  - libpng=1.6.39
  - libpq=16.1
  - libprotobuf=4.24.4
  - libre2-11=2023.06.02
  - librttopo=1.1.0
  - libsanitizer=13.2.0
  - libsndfile=1.2.2
  - libspatialite=5.1.0
  - libsqlite=3.44.2
  - libssh2=1.11.0
  - libstdcxx-devel_linux-64=13.2.0
  - libstdcxx-ng=13.2.0
  - libsystemd0=254
  - libthrift=0.19.0
  - libtiff=4.6.0
  - libudunits2=2.2.28
  - libutf8proc=2.8.0
  - libuuid=2.38.1
  - libvorbis=1.3.7
  - libwebp-base=1.3.2
  - libxcb=1.15
  - libxcrypt=4.4.36
  - libxkbcommon=1.6.0
  - libxml2=2.11.6
  - libzip=1.10.1
  - libzlib=1.2.13
  - lz4-c=1.9.4
  - lzo=2.10
  - make=4.3
  - matplotlib=3.8.2
  - matplotlib-base=3.8.2
  - methyldackel=0.6.1
  - metilene=0.2.8
  - minizip=4.0.3
  - mpg123=1.32.3
  - munkres=1.1.4
  - mysql-common=8.0.33
  - mysql-libs=8.0.33
  - ncurses=6.4.20240210
  - nlopt=2.7.1
  - nspr=4.35
  - nss=3.95
  - numpy=1.26.2
  - openjpeg=2.5.0
  - openssl=3.2.0
  - orc=1.9.2
  - packaging=23.2
  - pandas=2.1.3
  - pandoc=3.1.3
  - pango=1.50.14
  - pcre2=10.42
  - perl=5.32.1
  - pigz=2.8
  - pillow=10.1.0
  - pip=23.3.1
  - pixman=0.42.2
  - ply=3.11
  - poppler=23.11.0
  - poppler-data=0.4.12
  - postgresql=16.1
  - proj=9.3.0
  - pthread-stubs=0.4
  - pulseaudio-client=16.1
  - pyparsing=3.1.1
  - pyqt=5.15.9
  - pyqt5-sip=12.12.2
  - pysocks=1.7.1
  - python=3.12.0
  - python-dateutil=2.8.2
  - python-tzdata=2023.3
  - python_abi=3.12
  - pytz=2023.3.post1
  - pyyaml=6.0.1
  - qt-main=5.15.8
  - r-abind=1.4_5
  - r-arrow=14.0.1
  - r-askpass=1.2.0
  - r-assertthat=0.2.1
  - r-backports=1.4.1
  - r-base=4.3.2
  - r-base64enc=0.1_3
  - r-bh=1.81.0_1
  - r-biocmanager=1.30.22
  - r-bit=4.0.5
  - r-bit64=4.0.5
  - r-bitops=1.0_7
  - r-blob=1.2.4
  - r-boot=1.3_28.1
  - r-broom=1.0.5
  - r-bslib=0.6.0
  - r-cachem=1.0.8
  - r-car=3.1_2
  - r-cardata=3.0_5
  - r-caret=6.0_94
  - r-catools=1.18.2
  - r-cellranger=1.1.0
  - r-class=7.3_22
  - r-classint=0.4_10
  - r-cli=3.6.1
  - r-clipr=0.8.0
  - r-clock=0.7.0
  - r-cluster=2.1.5
  - r-codetools=0.2_19
  - r-colorspace=2.1_0
  - r-commonmark=1.9.0
  - r-conquer=1.3.3
  - r-corrgram=1.14
  - r-corrplot=0.92
  - r-cowplot=1.1.1
  - r-cpp11=0.4.6
  - r-crayon=1.5.2
  - r-crosstalk=1.2.1
  - r-curl=5.1.0
  - r-data.table=1.14.8
  - r-dbi=1.1.3
  - r-dbplyr=2.4.0
  - r-dendextend=1.17.1
  - r-diagram=1.6.5
  - r-digest=0.6.33
  - r-dplyr=1.1.4
  - r-dt=0.28
  - r-e1071=1.7_13
  - r-ellipse=0.5.0
  - r-ellipsis=0.3.2
  - r-emmeans=1.8.9
  - r-estimability=1.4.1
  - r-evaluate=0.23
  - r-factoextra=1.0.7
  - r-factominer=2.9
  - r-fansi=1.0.5
  - r-farver=2.1.1
  - r-fastmap=1.1.1
  - r-filelock=1.0.2
  - r-flashclust=1.01_2
  - r-fontawesome=0.5.2
  - r-forcats=1.0.0
  - r-foreach=1.5.2
  - r-foreign=0.8_86
  - r-formatr=1.14
  - r-fs=1.6.3
  - r-futile.logger=1.4.3
  - r-futile.options=1.0.1
  - r-future=1.33.0
  - r-future.apply=1.11.0
  - r-generics=0.1.3
  - r-ggforce=0.4.1
  - r-ggplot2=3.4.4
  - r-ggpubr=0.6.0
  - r-ggrepel=0.9.4
  - r-ggsci=3.0.0
  - r-ggsignif=0.6.4
  - r-ggvenndiagram=1.2.3
  - r-globals=0.16.2
  - r-glue=1.6.2
  - r-gower=1.0.1
  - r-gplots=3.1.3.1
  - r-gridextra=2.3
  - r-gtable=0.3.4
  - r-gtools=3.9.5
  - r-hardhat=1.3.0
  - r-haven=2.5.3
  - r-hexbin=1.28.3
  - r-highr=0.10
  - r-hms=1.1.3
  - r-htmltools=0.5.7
  - r-htmlwidgets=1.6.3
  - r-httpuv=1.6.12
  - r-httr=1.4.7
  - r-ipred=0.9_14
  - r-isoband=0.2.7
  - r-iterators=1.0.14
  - r-jquerylib=0.1.4
  - r-jsonlite=1.8.7
  - r-kernsmooth=2.23_22
  - r-knitr=1.45
  - r-labeling=0.4.3
  - r-lambda.r=1.2.4
  - r-later=1.3.1
  - r-lattice=0.22_5
  - r-lava=1.7.3
  - r-lazyeval=0.2.2
  - r-leaps=3.1
  - r-lifecycle=1.0.4
  - r-listenv=0.9.0
  - r-lme4=1.1_35.1
  - r-lubridate=1.9.3
  - r-magrittr=2.0.3
  - r-maptools=1.1_8
  - r-mass=7.3_60
  - r-matrix=1.6_3
  - r-matrixmodels=0.5_3
  - r-matrixstats=1.1.0
  - r-memoise=2.0.1
  - r-mgcv=1.9_0
  - r-mime=0.12
  - r-minqa=1.2.6
  - r-modelmetrics=1.2.2.2
  - r-multcompview=0.1_9
  - r-munsell=0.5.0
  - r-mvtnorm=1.2_4
  - r-nlme=3.1_164
  - r-nloptr=2.0.3
  - r-nnet=7.3_19
  - r-numderiv=2016.8_1.1
  - r-openssl=2.1.1
  - r-parallelly=1.36.0
  - r-pbkrtest=0.5.2
  - r-permute=0.9_7
  - r-pheatmap=1.0.12
  - r-pillar=1.9.0
  - r-pkgconfig=2.0.3
  - r-plogr=0.2.0
  - r-plotly=4.10.3
  - r-plyr=1.8.9
  - r-png=0.1_8
  - r-polyclip=1.10_6
  - r-polynom=1.4_1
  - r-prettyunits=1.2.0
  - r-proc=1.18.5
  - r-prodlim=2023.08.28
  - r-progress=1.2.2
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  - r-promises=1.2.1
  - r-proxy=0.4_27
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  - r-quantreg=5.97
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  - r-rcpparmadillo=0.12.6.4.0
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  - r-rcurl=1.98_1.13
  - r-readr=2.1.4
  - r-readxl=1.4.3
  - r-recipes=1.0.8
  - r-rematch=2.0.0
  - r-reshape2=1.4.4
  - r-restfulr=0.0.15
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  - r-rlang=1.1.2
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  - r-rsqlite=2.3.3
  - r-rstatix=0.7.2
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  - r-scales=1.3.0
  - r-scatterplot3d=0.3_44
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  - r-systemfonts=1.0.5
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  - r-timedate=4022.108
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  - r-yulab.utils=0.1.0
  - re2=2023.06.02
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  - requests=2.31.0
  - s2n=1.3.56
  - samtools=1.18
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  - setuptools=68.2.2
  - sip=6.7.12
  - six=1.16.0
  - snappy=1.1.10
  - sqlite=3.44.2
  - sysroot_linux-64=2.12
  - tiledb=2.16.3
  - tk=8.6.13
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  - tomli=2.0.1
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  - tzcode=2023c
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  - urllib3=2.1.0
  - wheel=0.42.0
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  - xcb-util-keysyms=0.4.0
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  - xerces-c=3.2.4
  - xkeyboard-config=2.40
  - xmltodict=0.13.0
  - xorg-kbproto=1.0.7
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  - xorg-libxau=1.0.11
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  - xz=5.2.6
  - yaml=0.2.5
  - yq=3.2.3
  - zlib=1.2.13
  - zstd=1.5.5
prefix: /home/ana/miniconda3/envs/methylation