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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 351 151

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 413 repositories
  • deep-neurographs Public

    A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 6, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 6, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 67 4 Updated Feb 6, 2025
  • ctree Public

    Python helper functions to work with the Tasic et al. 2018 hierarchical cell type tree

    AllenInstitute/ctree’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Feb 6, 2025
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 282 BSD-3-Clause 89 58 9 Updated Feb 6, 2025
  • DemoMkdocsSite Public

    Demo site for documentation. Focused on having nested repositories and building with mkdocs

    AllenInstitute/DemoMkdocsSite’s past year of commit activity
    0 0 0 0 Updated Feb 5, 2025
  • AllenInstitute/motion_energy_PCA’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 5, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 286 12 Updated Feb 5, 2025
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 22 4 5 2 Updated Feb 5, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 5, 2025