scenario6.txt

# Scenarion 2
#
# Number of chromosome = 24
# Length of chromosome = 1000000
# Mutation level = 0.000005
# Mean DP = 20
# Noise = 3
#
# Comands:
duplication clone=0 chr=9 coordinates=1-1000000 strand=A
add_clone fraction=0.6 parent=0 strategy=parental
duplication clone=1 chr=14 coordinates=1-1000000 strand=A
duplication clone=1 chr=6 coordinates=1-1000000 strand=B
add_clone fraction=0.05 parent=0 strategy=parental
duplication clone=0 chr=15 coordinates=1-1000000 strand=A
duplication clone=0 chr=7 coordinates=1-1000000 strand=A
duplication clone=2 chr=9 coordinates=1-500000 strand=A
deletion clone=2 chr=8 coordinates=1-1000000 strand=B
sample name=sample1
add_clone fraction=0.1 parent=1 strategy=parental
duplication clone=3 chr=14 coordinates=1-500000 strand=A
deletion clone=3 chr=10 coordinates=1-1000000 strand=B
duplication clone=1 chr=6 coordinates=1-500000 strand=A
duplication clone=1 chr=11 coordinates=1-1000000 strand=A
deletion clone=0 chr=12 coordinates=1-1000000 strand=B
duplication clone=2 chr=13 coordinates=1-1000000 strand=A
sample name=sample2
add_clone fraction=0.1 parent=0 strategy=parental
duplication clone=3 chr=1 coordinates=1-1000000 strand=A
deletion clone=1 chr=2 coordinates=1-1000000 strand=B
duplication clone=0 chr=3 coordinates=1-1000000 strand=A
duplication clone=4 chr=15 coordinates=1-500000 strand=A
deletion clone=4 chr=4 coordinates=1-1000000 strand=B
duplication clone=2 chr=5 coordinates=1-1000000 strand=A
sample name=sample3