bug fix: Infer effect column

Al-Murphy · Aug 1, 2024 · 5422978 · 5422978
1 parent 3ae9f02
commit 5422978
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: MungeSumstats
 Type: Package
 Title: Standardise summary statistics from GWAS
-Version: 1.12.1
+Version: 1.12.2
 Authors@R:
     c(person(given = "Alan",
            family = "Murphy",

diff --git a/R/get_genome_build.R b/R/get_genome_build.R
@@ -221,11 +221,11 @@ get_genome_build <- function(sumstats,
                                  "ref_allele"="A2","alt_alleles"="A1"),
                           nomatch = FALSE
         ])
-      if(num_a2>=num_a1){
+      if(num_a1>=num_a2){
         message("Effect/frq column(s) relate to A2 in the inputted sumstats")
         #this is what MSS expects so no action required
         switch_req <- FALSE
-      }else{#num_a2<num_a1
+      }else{#num_a1<num_a2
         message("Effect/frq column(s) relate to A1 in the inputted sumstats")
         switch_req <- TRUE
       }