GHA update #97
Annotations
2 errors and 14 warnings
macOS-latest (latest)
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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ubuntu-latest (devel)
System.IO.IOException: No space left on device : '/home/runner/runners/2.321.0/_diag/Worker_20241218-092618-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Worker.Worker.RunAsync(String pipeIn, String pipeOut)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
System.IO.IOException: No space left on device : '/home/runner/runners/2.321.0/_diag/Worker_20241218-092618-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Common.Tracing.Error(Exception exception)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
Unhandled exception. System.IO.IOException: No space left on device : '/home/runner/runners/2.321.0/_diag/Worker_20241218-092618-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at System.Diagnostics.TraceSource.Flush()
at GitHub.Runner.Common.Tracing.Dispose(Boolean disposing)
at GitHub.Runner.Common.Tracing.Dispose()
at GitHub.Runner.Common.TraceManager.Dispose(Boolean disposing)
at GitHub.Runner.Common.TraceManager.Dispose()
at GitHub.Runner.Common.HostContext.Dispose(Boolean disposing)
at GitHub.Runner.Common.HostContext.Dispose()
at GitHub.Runner.Worker.Program.Main(String[] args)
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macOS-latest (latest)
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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macOS-latest (latest)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (latest)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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macOS-latest (latest)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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macOS-latest (latest)
macOS's Gatekeeper has been disabled for this Cask
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macOS-latest (latest)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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macOS-latest (latest)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
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macOS-latest (latest)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
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macOS-latest (latest)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
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macOS-latest (latest)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’
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macOS-latest (latest)
Unexpected input(s) 'free_disk_space', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'CODECOV_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace', 'run_telemetry']
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macOS-latest (latest)
Unexpected input(s) 'free_disk_space', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'CODECOV_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace', 'run_telemetry']
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ubuntu-latest (devel)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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ubuntu-latest (devel)
Unexpected input(s) 'free_disk_space', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'CODECOV_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace', 'run_telemetry']
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