--- re-building ‘docker.Rmd’ using rmarkdown

processing vignette 'MungeSumstats.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz

macOS's Gatekeeper has been disabled for this Cask

dependencies ‘BiocVersion’, ‘BiocStyle’ are not available

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’

replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’

No files were found with the provided path: check. No artifacts will be uploaded.

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 99 MB

Unexpected input(s) 'free_disk_space', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'CODECOV_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace']