PLSDAbatch

A new multivariate and non-parametric batch effect correction method based on Partial Least Squares Discriminant Analysis for microbial metagenome data.

pkgdown web page

The web page includes all the functions and vignettes within the package.

Link: https://evayiwenwang.github.io/PLSDAbatch/

Installation

Installation without vignettes

devtools::install_github("https://github.com/EvaYiwenWang/PLSDAbatch")

Installation with vignettes

devtools::install_github("https://github.com/EvaYiwenWang/PLSDAbatch", dependencies = T, build_vignettes = T)

Reference

Wang, Y., & Lê Cao, K. A. (2020). A multivariate method to correct for batch effects in microbiome data. bioRxiv. https://www.biorxiv.org/content/10.1101/2020.10.27.358283v1