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CRAB.yml
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name: CRAB
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.0=anacondar_1
- _sysroot_linux-64_curr_repodata_hack=3=haa98f57_10
- abricate=1.0.1=ha8f3691_1
- alsa-lib=1.2.8=h166bdaf_0
- any2fasta=0.4.2=hdfd78af_3
- aragorn=1.2.41=hec16e2b_0
- augustus=3.5.0=pl5321hf46c7bb_1
- bamtools=2.5.1=hd03093a_10
- barrnap=0.9=hdfd78af_4
- bedtools=2.30.0=h468198e_3
- binutils_impl_linux-64=2.38=h2a08ee3_1
- biopython=1.70=np112py27_1
- blas=1.1=openblas
- blast=2.13.0=hf3cf87c_0
- boost-cpp=1.74.0=h75c5d50_8
- busco=3.0.2=py27_8
- bwidget=1.9.11=1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.10.11=h06a4308_0
- cairo=1.16.0=ha61ee94_1014
- cdbtools=0.99=hd03093a_7
- certifi=2020.6.20=pyhd3eb1b0_3
- clustalw=2.1=h9f5acd7_7
- curl=7.85.0=h5eee18b_0
- diamond=2.0.15=hb97b32f_1
- entrez-direct=16.2=he881be0_1
- expat=2.5.0=h27087fc_0
- fastp=0.23.2=h5f740d0_3
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=11.2.0=h1234567_1
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=11.2.0=h1234567_1
- giflib=5.2.1=h36c2ea0_2
- gmp=6.2.1=h295c915_3
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7.1=h6e86dc7_1
- gxx_impl_linux-64=11.2.0=h1234567_1
- harfbuzz=5.3.0=h418a68e_0
- hmmer=3.3.2=h87f3376_2
- htslib=1.16=h6bc39ce_0
- icu=70.1=h27087fc_0
- infernal=1.1.4=pl5321hec16e2b_1
- isa-l=2.30.0=ha770c72_4
- jpeg=9e=h166bdaf_2
- kernel-headers_linux-64=3.10.0=h57e8cba_10
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcups=2.3.3=h3e49a29_2
- libcurl=7.85.0=h91b91d3_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=11.2.0=h1234567_1
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran=3.0.0=1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libglib=2.74.1=h7a41b64_0
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libidn11=1.34=h1cef754_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.46.0=hce63b2e_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=h043d6bf_0
- libpng=1.6.39=h753d276_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-devel_linux-64=11.2.0=h1234567_1
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h0e0dad5_3
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- lp_solve=5.5.2.5=h14c3975_1001
- make=4.2.1=h1bed415_1
- metis=5.1.0=hf484d3e_4
- minced=0.4.2=hdfd78af_1
- mlst=2.23.0=hdfd78af_0
- mmtf-python=1.0.2=py27_0
- mpfr=4.0.2=hb69a4c5_1
- msgpack-python=0.6.1=py27hfd86e86_1
- mysql-connector-c=6.1.11=h24aacaa_2
- ncurses=6.3=h27087fc_1
- numpy=1.12.1=py27_blas_openblashb06ca3d_1
- olefile=0.46=pyhd3eb1b0_0
- openblas=0.3.3=ha44fe06_1
- openjdk=17.0.3=hafdced1_4
- openssl=1.1.1s=h7f8727e_0
- paml=4.9=hec16e2b_7
- pango=1.50.12=h382ae3d_0
- parallel=20221122=ha770c72_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=he7ceb23_1
- perl=5.32.1=2_h7f98852_perl5
- perl-algorithm-diff=1.201=pl5321hd8ed1ab_0
- perl-app-cpanminus=1.7046=pl5321hd8ed1ab_0
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-base=2.23=pl5321hd8ed1ab_0
- perl-bio-asn1-entrezgene=1.73=pl5321hdfd78af_3
- perl-bio-coordinate=1.007001=pl5321hdfd78af_3
- perl-bio-featureio=1.6.905=pl5321hdfd78af_4
- perl-bio-samtools=1.43=pl5321h7132678_3
- perl-bio-searchio-hmmer=1.7.3=pl5321hdfd78af_0
- perl-bio-tools-phylo-paml=1.7.3=pl5321hdfd78af_3
- perl-bio-tools-run-alignment-clustalw=1.7.4=pl5321hdfd78af_3
- perl-bio-tools-run-alignment-tcoffee=1.7.4=pl5321hdfd78af_4
- perl-bioperl=1.7.8=hdfd78af_1
- perl-bioperl-core=1.7.8=pl5321hdfd78af_1
- perl-bioperl-run=1.007003=pl5321hdfd78af_0
- perl-business-isbn=3.007=pl5321hd8ed1ab_0
- perl-business-isbn-data=20210112.006=pl5321hd8ed1ab_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-class-data-inheritable=0.09=pl5321ha770c72_0
- perl-class-method-modifiers=2.13=pl5321ha770c72_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-constant=1.33=pl5321hd8ed1ab_0
- perl-cpan-meta=2.150010=pl5321hdfd78af_1
- perl-cpan-meta-requirements=2.140=pl5321hdfd78af_1
- perl-cpan-meta-yaml=0.018=pl5321hdfd78af_1
- perl-data-dumper=2.183=pl5321h166bdaf_0
- perl-db_file=1.858=pl5321h166bdaf_0
- perl-dbi=1.643=pl5321hec16e2b_1
- perl-devel-stacktrace=2.04=pl5321ha770c72_0
- perl-digest-hmac=1.04=pl5321hdfd78af_0
- perl-digest-md5=2.58=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-encode-locale=1.05=pl5321hdfd78af_7
- perl-exception-class=1.45=pl5321hdfd78af_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-cbuilder=0.280230=pl5321hdfd78af_2
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-extutils-manifest=1.73=pl5321hdfd78af_0
- perl-extutils-parsexs=3.44=pl5321hdfd78af_0
- perl-file-listing=6.15=pl5321hdfd78af_0
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-slurp-tiny=0.004=pl5321hdfd78af_2
- perl-file-sort=1.01=pl5321hdfd78af_3
- perl-file-spec=3.48_01=pl5321hdfd78af_2
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-file-which=1.24=pl5321hd8ed1ab_0
- perl-getopt-long=2.54=pl5321hdfd78af_0
- perl-html-parser=3.80=pl5321h9f5acd7_0
- perl-html-tagset=3.20=pl5321hdfd78af_4
- perl-http-cookies=6.10=pl5321hdfd78af_0
- perl-http-daemon=6.14=pl5321hdfd78af_0
- perl-http-date=6.05=pl5321hdfd78af_0
- perl-http-message=6.36=pl5321hdfd78af_0
- perl-http-negotiate=6.01=pl5321hdfd78af_4
- perl-io-compress=2.201=pl5321h87f3376_0
- perl-io-html=1.004=pl5321hdfd78af_0
- perl-io-socket-ssl=2.075=pl5321hd8ed1ab_0
- perl-io-string=1.08=pl5321hdfd78af_4
- perl-io-tty=1.16=pl5321h166bdaf_0
- perl-io-zlib=1.11=pl5321hdfd78af_0
- perl-ipc-cmd=1.04=pl5321hdfd78af_0
- perl-ipc-run=20200505.0=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-pp=4.11=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- perl-libwww-perl=6.39=pl5321hdfd78af_1
- perl-libxml-perl=0.08=pl5321hdfd78af_3
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- perl-locale-maketext-simple=0.21=pl5321hdfd78af_3
- perl-lwp-mediatypes=6.04=pl5321hdfd78af_1
- perl-lwp-simple=6.39=pl5321h9ee0642_5
- perl-mime-base64=3.16=pl5321h166bdaf_0
- perl-module-build=0.4231=pl5321hdfd78af_0
- perl-module-corelist=5.20220620=pl5321hdfd78af_0
- perl-module-load=0.34=pl5321hdfd78af_0
- perl-module-load-conditional=0.68=pl5321hdfd78af_3
- perl-module-metadata=1.000037=pl5321hdfd78af_0
- perl-moo=2.005004=pl5321ha770c72_0
- perl-net-http=6.22=pl5321hdfd78af_0
- perl-net-ssleay=1.92=pl5321h0e0aaa8_1
- perl-ntlm=1.09=pl5321hdfd78af_5
- perl-parallel-forkmanager=2.02=pl5321hdfd78af_1
- perl-params-check=0.38=pl5321hdfd78af_2
- perl-parent=0.238=pl5321hd8ed1ab_0
- perl-path-tiny=0.124=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-perl-ostype=1.010=pl5321hdfd78af_2
- perl-role-tiny=2.002004=pl5321ha770c72_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-socket=2.027=pl5321hec16e2b_3
- perl-storable=3.15=pl5321h166bdaf_0
- perl-sub-quote=2.006006=pl5321ha770c72_0
- perl-sub-uplevel=0.2800=pl5321h166bdaf_0
- perl-test-deep=1.130=pl5321hd8ed1ab_0
- perl-test-differences=0.69=pl5321ha770c72_0
- perl-test-exception=0.43=pl5321hd8ed1ab_0
- perl-test-fatal=0.016=pl5321ha770c72_0
- perl-test-most=0.38=pl5321hdfd78af_0
- perl-test-warn=0.37=pl5321hd8ed1ab_0
- perl-text-abbrev=1.02=pl5321hdfd78af_1
- perl-text-diff=1.45=pl5321hd8ed1ab_0
- perl-text-parsewords=3.31=pl5321hdfd78af_0
- perl-threaded=5.32.1=hdfd78af_1
- perl-time-local=1.30=pl5321hdfd78af_0
- perl-timedate=2.33=pl5321hdfd78af_2
- perl-tree-dag_node=1.32=pl5321hdfd78af_0
- perl-try-tiny=0.31=pl5321ha770c72_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-uri=5.12=pl5321hdfd78af_0
- perl-url-encode=0.03=pl5321h9ee0642_0
- perl-version=0.9924=pl5321hec16e2b_2
- perl-www-robotrules=6.02=pl5321hdfd78af_4
- perl-xml-dom=1.46=pl5321hdfd78af_1
- perl-xml-dom-xpath=0.14=pl5321hdfd78af_2
- perl-xml-namespacesupport=1.12=pl5321hd8ed1ab_0
- perl-xml-parser=2.44_01=pl5321hc3e0081_1003
- perl-xml-regexp=0.04=pl5321hdfd78af_3
- perl-xml-sax=1.02=pl5321hd8ed1ab_0
- perl-xml-sax-base=1.09=pl5321hd8ed1ab_0
- perl-xml-sax-expat=0.51=pl5321hd8ed1ab_0
- perl-xml-simple=2.25=pl5321hdfd78af_2
- perl-xml-xpathengine=0.14=pl5321hdfd78af_3
- perl-yaml=1.30=pl5321hdfd78af_0
- pillow=6.2.1=py27h34e0f95_0
- pip=20.1.1=pyh9f0ad1d_0
- pixman=0.40.0=h36c2ea0_0
- prodigal=2.6.3=hec16e2b_4
- prokka=1.14.6=pl5321hdfd78af_4
- pthread-stubs=0.4=h36c2ea0_1001
- python=2.7.18=h42bf7aa_3
- python_abi=2.7=1_cp27mu
- r-base=4.2.1=h7880091_2
- r-cli=3.3.0=r42h884c59f_0
- r-colorspace=2.0_3=r42h76d94ec_0
- r-crayon=1.5.1=r42h6115d3f_0
- r-digest=0.6.29=r42h884c59f_0
- r-ellipsis=0.3.2=r42h76d94ec_0
- r-fansi=1.0.3=r42h76d94ec_0
- r-farver=2.1.0=r42h884c59f_0
- r-ggplot2=3.3.6=r42h6115d3f_0
- r-glue=1.6.2=r42h76d94ec_0
- r-gtable=0.3.0=r42h6115d3f_0
- r-isoband=0.2.5=r42h884c59f_0
- r-labeling=0.4.2=r42h6115d3f_0
- r-lattice=0.20_45=r42h76d94ec_0
- r-lifecycle=1.0.1=r42h142f84f_0
- r-magrittr=2.0.3=r42h76d94ec_0
- r-mass=7.3_57=r42h76d94ec_0
- r-matrix=1.4_1=r42h76d94ec_0
- r-mgcv=1.8_40=r42h76d94ec_0
- r-munsell=0.5.0=r42h6115d3f_0
- r-nlme=3.1_157=r42h640688f_0
- r-pillar=1.7.0=r42h6115d3f_0
- r-pkgconfig=2.0.3=r42h6115d3f_0
- r-r6=2.5.1=r42h6115d3f_0
- r-rcolorbrewer=1.1_3=r42h6115d3f_0
- r-rlang=1.0.2=r42h884c59f_0
- r-scales=1.2.0=r42h6115d3f_0
- r-tibble=3.1.7=r42h76d94ec_0
- r-utf8=1.2.2=r42h76d94ec_0
- r-vctrs=0.4.1=r42h884c59f_0
- r-viridislite=0.4.0=r42h6115d3f_0
- r-withr=2.5.0=r42h6115d3f_0
- readline=8.1.2=h0f457ee_0
- reportlab=3.5.26=py27he686d34_0
- sed=4.8=h7b6447c_0
- setuptools=44.0.0=py27_0
- sqlite=3.40.0=h4ff8645_0
- suitesparse=5.10.1=he2db622_2
- sysroot_linux-64=2.17=h57e8cba_10
- t_coffee=11.0.8=py27_2
- tar=1.34=hb2e2bae_1
- tbb=2021.6.0=hdb19cb5_0
- tbl2asn-forever=25.7.2f=hec16e2b_2
- tk=8.6.12=h27826a3_0
- tktable=2.10=h14c3975_0
- ucsc-fatotwobit=377=ha8a8165_5
- ucsc-twobitinfo=377=ha8a8165_3
- unzip=6.0=h7f98852_3
- wget=1.21.3=h0b77cf5_0
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
prefix: /home/ssh_user/mambaforge/envs/CRAB