Workaround for bug in libsbml

AbeelLab · Feb 6, 2025 · 596ced4 · 596ced4
1 parent 0e17178
commit 596ced4
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/jaxkineticmodel/load_sbml/sympy_converter.py b/jaxkineticmodel/load_sbml/sympy_converter.py
@@ -183,6 +183,7 @@ class LibSBMLConverter(Converter):
     }
 
     def libsbml2sympy(self, node: libsbml.ASTNode) -> sympy.Basic:
+        node = libsbml.ASTNode(node)    # Work around a bug in libsbml
         if not node.isWellFormedASTNode():
             raise ValueError('Got invalid libSBML AST node')
 
@@ -265,4 +266,4 @@ def convert_libsbml_FUNCTION(self, node, children) -> sympy.Basic:
             raise ValueError("FUNCTION node has no associated name")
 
         sympy_function = sympy.Function(function_name)  # Define function
-        return sympy_function(*children)  # Apply function to arguments
+        return sympy_function(*children)  # Apply function to arguments