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ArchRLogs
ArchRLogs
 
 
AstrocyteSubset
AstrocyteSubset
 
 
GliaSubset
GliaSubset
 
 
NeuronSubset
NeuronSubset
 
 
OligoSubset
OligoSubset
 
 
QualityControl
QualityControl
 
 
Save-ProjStriata1
Save-ProjStriata1
 
 
Save-ProjStriata2
Save-ProjStriata2
 
 
Save-ProjStriata3/Plots
Save-ProjStriata3/Plots
 
 
StemSubset
StemSubset
 
 
Striata
Striata
 
 
.gitignore
.gitignore
 
 
Neuron_subcluster_4TSSEnrichment.txt
Neuron_subcluster_4TSSEnrichment.txt
 
 
Neuron_subcluster_4TSSEnrichment_fourcluster.txt
Neuron_subcluster_4TSSEnrichment_fourcluster.txt
 
 
Neuron_subcluster_4TSSEnrichment_res.5.txt
Neuron_subcluster_4TSSEnrichment_res.5.txt
 
 
Neuron_subcluster_4TSSEnrichment_res.7.txt
Neuron_subcluster_4TSSEnrichment_res.7.txt
 
 
Neuron_subcluster_4TSSEnrichment_res.8.txt
Neuron_subcluster_4TSSEnrichment_res.8.txt
 
 
Neuron_subcluster_4TSSEnrichment_threesubclusters.txt
Neuron_subcluster_4TSSEnrichment_threesubclusters.txt
 
 
Neuron_subcluster_4TSSEnrichment_twosubclusters.txt
Neuron_subcluster_4TSSEnrichment_twosubclusters.txt
 
 
Neurons-by-treatment-res.5.csv
Neurons-by-treatment-res.5.csv
 
 
Neurons-by-treatment-res.7.csv
Neurons-by-treatment-res.7.csv
 
 
Neurons-by-treatment-res.8.csv
Neurons-by-treatment-res.8.csv
 
 
Neurons-by-treatment-threesubclusters.csv
Neurons-by-treatment-threesubclusters.csv
 
 
Number_of_cells_per_Sample_4TSSEnrichment.txt
Number_of_cells_per_Sample_4TSSEnrichment.txt
 
 
README.md
README.md
 
 
_FC0.5.png
_FC0.5.png
 
 
cM.csv
cM.csv
 
 
cc_go.png
cc_go.png
 
 
cc_gos.png
cc_gos.png
 
 
cellsPerCluster.csv
cellsPerCluster.csv
 
 
cells_treatment.csv
cells_treatment.csv
 
 
marker_genes.txt
marker_genes.txt
 
 
markerlist.csv
markerlist.csv
 
 
markerlist_0.5.csv
markerlist_0.5.csv
 
 
markerlist_1-25.csv
markerlist_1-25.csv
 
 
markerlist_1.csv
markerlist_1.csv
 
 
markerlist_neuron.csv
markerlist_neuron.csv
 
 
markerlist_neuron_0.5.csv
markerlist_neuron_0.5.csv
 
 
markerlist_neuron_1.csv
markerlist_neuron_1.csv
 
 
markerlist_neuron_res-.7.csv
markerlist_neuron_res-.7.csv
 
 
markerlist_neuron_res-fourclusters.csv
markerlist_neuron_res-fourclusters.csv
 
 
markerlist_neuron_res-threeclusters.csv
markerlist_neuron_res-threeclusters.csv
 
 
markerscount.csv
markerscount.csv
 
 
mmc3.csv
mmc3.csv
 
 
projStriata-astrocyte.Rmd
projStriata-astrocyte.Rmd
 
 
projStriata-glial.Rmd
projStriata-glial.Rmd
 
 
projStriata-oligodendrocytes.Rmd
projStriata-oligodendrocytes.Rmd
 
 
projStriata-stem.Rmd
projStriata-stem.Rmd
 
 
projStriata1.Rmd
projStriata1.Rmd
 
 
projStriata2.Rmd
projStriata2.Rmd
 
 
projStriata3.Rmd
projStriata3.Rmd
 
 
projStriata5_neuronSubcluster.Rmd
projStriata5_neuronSubcluster.Rmd
 
 
proj_FC0.5.png
proj_FC0.5.png
 
 
proportion_all-fourclusters.png
proportion_all-fourclusters.png
 
 
proportion_all-res.5.png
proportion_all-res.5.png
 
 
proportion_all-res.7.png
proportion_all-res.7.png
 
 
proportion_all-res.8.png
proportion_all-res.8.png
 
 
proportion_all-twoclusters.png
proportion_all-twoclusters.png
 
 
proportion_all.png
proportion_all.png
 
 
proportion_all_threeclusters.png
proportion_all_threeclusters.png
 
 
proportions-treatment-fourclusters.png
proportions-treatment-fourclusters.png
 
 
proportions-treatment-twoclusters.png
proportions-treatment-twoclusters.png
 
 
proportions.5.png
proportions.5.png
 
 
proportions.7.png
proportions.7.png
 
 
proportions.8.png
proportions.8.png
 
 
proportions.png
proportions.png
 
 
proportions_treatment_threeclusters.png
proportions_treatment_threeclusters.png
 
 
striata.Rproj
striata.Rproj
 
 

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scATAC_striata

This repo will be used for scATAC analysis of striata generated by Bo for Marissa's lab.

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