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0.2.3.1
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@FTouzain FTouzain released this 03 Jan 12:43
· 28 commits to main since this release
0.2.3.1
8297d9d
  • correct typo errors, add parameters in xml wrapper
  • remove '%' in vvv2_display.py help
  • update Galaxy xml wrapper to get 2 additional arguments: linear scale for cov_depth and max variant threshold (%age)
  • bug correction: 1 added to all covdepth at all positions to avoid log(0)=-inf
  • updated yaml (conda recipe) and xml (galaxy wrapper)
  • now ordinate scale use threshold provided as argument, not hardcoded (it was already the case for treshold line)
  • bug correction: handle vardict LSEQ=ACC_NR:ddd-ddd instead of nucleotides and RSEQ=SNV
  • set as default log10 display for covdepth graph, add -y option to set this scale linear
  • add option -w to define the percentage threshold to consider significant a variant
  • bug correction: handle now stem loop occuring when gene is expected in tab file for conversion to json file
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