From d11e72a1e622225b3f7a834ca0449f2ce5a5c27b Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 10:13:08 -0500 Subject: [PATCH 1/9] [fix] replace all deprecated email addresses Replaces all instances of 'mgoubran@stanford.edu' with 'maged.goubran@utoronto.ca' across all files. --- miracl/connect/miracl_connect_ROI_matrix_connectogram.py | 2 +- miracl/connect/miracl_connect_csd_tractography.sh | 2 +- miracl/connect/miracl_connect_label_graph_proj_dens.py | 2 +- miracl/conv/miracl_conv_convertDCMtoNII.sh | 2 +- miracl/conv/miracl_conv_convertNIItoTIFF.py | 2 +- miracl/conv/miracl_conv_convertTIFFtoNII.py | 2 +- miracl/conv/miracl_conv_file_folder_gui.py | 2 +- miracl/conv/miracl_conv_gui_options.py | 2 +- miracl/deprec/miracl_analyze_particles_clarity_3D.ijm | 2 +- miracl/deprec/miracl_extract_clarity_features_wrapper.sh | 2 +- miracl/deprec/miracl_io_file_folder_gui_tkinter.py | 2 +- miracl/deprec/miracl_io_gui_options_pyqt.py | 2 +- miracl/deprec/miracl_utils_int_corr_tiffs_2D.py | 2 +- miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py | 2 +- miracl/lbls/miracl_lbls_generate_parents_at_depth.py | 2 +- miracl/lbls/miracl_lbls_get_gp_volumes.py | 2 +- miracl/lbls/miracl_lbls_get_graph_info.py | 2 +- miracl/lbls/miracl_lbls_stats.py | 2 +- miracl/lbls/miracl_lbls_warp_to_clar_space.sh | 2 +- miracl/lbls/miracl_lbls_warp_to_mri_space.sh | 2 +- miracl/miraclGUI.py | 2 +- miracl/reg/miracl_reg_check_results.py | 2 +- miracl/seg/miracl_seg_feat_extract.py | 2 +- miracl/seg/miracl_seg_feats_cortex.py | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm | 2 +- miracl/seg/miracl_seg_voxelize_parallel.py | 2 +- miracl/sta/miracl_sta_create_force_graph.py | 2 +- miracl/sta/miracl_sta_gen_tract_density.py | 2 +- miracl/sta/miracl_sta_gen_tract_endpoints.py | 2 +- miracl/sta/miracl_sta_track.py | 2 +- miracl/sta/miracl_sta_track_primary_eigen.py | 2 +- miracl/sta/sta_gui.py | 2 +- miracl/stats/miracl_stats_paired_ttest_group.py | 2 +- miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py | 2 +- miracl/utilfn/miracl_utilfn_create_brainmask.py | 2 +- miracl/utilfn/miracl_utilfn_endstatement.py | 2 +- miracl/utilfn/miracl_utilfn_extract_lbl.py | 2 +- miracl/utilfn/miracl_utilfn_int_corr_tiffs.py | 2 +- setup.py | 2 +- 45 files changed, 45 insertions(+), 45 deletions(-) diff --git a/miracl/connect/miracl_connect_ROI_matrix_connectogram.py b/miracl/connect/miracl_connect_ROI_matrix_connectogram.py index 67bc3a63..a3b903dc 100755 --- a/miracl/connect/miracl_connect_ROI_matrix_connectogram.py +++ b/miracl/connect/miracl_connect_ROI_matrix_connectogram.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/connect/miracl_connect_csd_tractography.sh b/miracl/connect/miracl_connect_csd_tractography.sh index 644eabd4..f4ae00f2 100755 --- a/miracl/connect/miracl_connect_csd_tractography.sh +++ b/miracl/connect/miracl_connect_csd_tractography.sh @@ -61,7 +61,7 @@ Optional arguments: ----------------------------------- (c) Maged Goubran @ Stanford University, 2017 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/connect/miracl_connect_label_graph_proj_dens.py b/miracl/connect/miracl_connect_label_graph_proj_dens.py index 067a6c13..a39647b9 100755 --- a/miracl/connect/miracl_connect_label_graph_proj_dens.py +++ b/miracl/connect/miracl_connect_label_graph_proj_dens.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_convertDCMtoNII.sh b/miracl/conv/miracl_conv_convertDCMtoNII.sh index c5521301..6b7096a3 100755 --- a/miracl/conv/miracl_conv_convertDCMtoNII.sh +++ b/miracl/conv/miracl_conv_convertDCMtoNII.sh @@ -33,7 +33,7 @@ function usage() ----------------------------------- (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/conv/miracl_conv_convertNIItoTIFF.py b/miracl/conv/miracl_conv_convertNIItoTIFF.py index ebc429f7..1ebaef21 100755 --- a/miracl/conv/miracl_conv_convertNIItoTIFF.py +++ b/miracl/conv/miracl_conv_convertNIItoTIFF.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_convertTIFFtoNII.py b/miracl/conv/miracl_conv_convertTIFFtoNII.py index 0eb7b049..92051c4e 100755 --- a/miracl/conv/miracl_conv_convertTIFFtoNII.py +++ b/miracl/conv/miracl_conv_convertTIFFtoNII.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_file_folder_gui.py b/miracl/conv/miracl_conv_file_folder_gui.py index 5af34d6d..511f5ecd 100755 --- a/miracl/conv/miracl_conv_file_folder_gui.py +++ b/miracl/conv/miracl_conv_file_folder_gui.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_gui_options.py b/miracl/conv/miracl_conv_gui_options.py index 18355ab2..a52f4d69 100755 --- a/miracl/conv/miracl_conv_gui_options.py +++ b/miracl/conv/miracl_conv_gui_options.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm b/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm index 4801c08b..0a610d5c 100755 --- a/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm +++ b/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm @@ -4,7 +4,7 @@ // Extracts features from segmented clarity data using 3D partcile analysis // & summarizes the data per label (Allen atlas label) // -// (c) Maged Goubran, mgoubran@stanford.edu, 2016 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2016 // // dependencies: // diff --git a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh index eabf4e5b..9a4a8b91 100755 --- a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh +++ b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh @@ -55,7 +55,7 @@ function usage() ----------------------------------- (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/deprec/miracl_io_file_folder_gui_tkinter.py b/miracl/deprec/miracl_io_file_folder_gui_tkinter.py index 35533810..49c7938c 100755 --- a/miracl/deprec/miracl_io_file_folder_gui_tkinter.py +++ b/miracl/deprec/miracl_io_file_folder_gui_tkinter.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_io_gui_options_pyqt.py b/miracl/deprec/miracl_io_gui_options_pyqt.py index b4acca00..e8fc9379 100755 --- a/miracl/deprec/miracl_io_gui_options_pyqt.py +++ b/miracl/deprec/miracl_io_gui_options_pyqt.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py b/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py index a262040c..2e8d3ef6 100755 --- a/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py +++ b/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py b/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py index b97cc16d..464a8700 100755 --- a/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py +++ b/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_generate_parents_at_depth.py b/miracl/lbls/miracl_lbls_generate_parents_at_depth.py index 4b40576e..8472c8e7 100755 --- a/miracl/lbls/miracl_lbls_generate_parents_at_depth.py +++ b/miracl/lbls/miracl_lbls_generate_parents_at_depth.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_get_gp_volumes.py b/miracl/lbls/miracl_lbls_get_gp_volumes.py index 6f5389d8..3a68885c 100755 --- a/miracl/lbls/miracl_lbls_get_gp_volumes.py +++ b/miracl/lbls/miracl_lbls_get_gp_volumes.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_get_graph_info.py b/miracl/lbls/miracl_lbls_get_graph_info.py index 005dab12..a53fcd1f 100755 --- a/miracl/lbls/miracl_lbls_get_graph_info.py +++ b/miracl/lbls/miracl_lbls_get_graph_info.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_stats.py b/miracl/lbls/miracl_lbls_stats.py index c2a161e2..4318a083 100755 --- a/miracl/lbls/miracl_lbls_stats.py +++ b/miracl/lbls/miracl_lbls_stats.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu +# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh index e93c9566..2e85a40b 100755 --- a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh @@ -54,7 +54,7 @@ function usage() ----------------------------------- (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh index b2de48da..651cade9 100755 --- a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh @@ -52,7 +52,7 @@ function usage() ----------------------------------- (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/miraclGUI.py b/miracl/miraclGUI.py index 513ca964..0189ca97 100755 --- a/miracl/miraclGUI.py +++ b/miracl/miraclGUI.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/reg/miracl_reg_check_results.py b/miracl/reg/miracl_reg_check_results.py index 6078f947..813c6781 100755 --- a/miracl/reg/miracl_reg_check_results.py +++ b/miracl/reg/miracl_reg_check_results.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_feat_extract.py b/miracl/seg/miracl_seg_feat_extract.py index 4a58d071..859db034 100755 --- a/miracl/seg/miracl_seg_feat_extract.py +++ b/miracl/seg/miracl_seg_feat_extract.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_feats_cortex.py b/miracl/seg/miracl_seg_feats_cortex.py index 828140e6..54bdfed5 100755 --- a/miracl/seg/miracl_seg_feats_cortex.py +++ b/miracl/seg/miracl_seg_feats_cortex.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2018, mgoubran@stanford.edu +# Maged Goubran @ 2018, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm index e40e269b..4381e5f9 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments cFos positive nuclei in cleared mouse brain in 3D using CLARITY/iDISCO+ and immunolabelling // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // Newton Cho, newton.cho@epfl.ch, // Jordan Squair, jordansquair@gmail.com // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm index 2d016d21..1ad6e3a3 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm index 26a22836..e174a408 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm index 285df48e..d65043f5 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2016 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2016 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm index b9c1f948..58ed6ca2 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of sparse stains (like Thy1) in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm index f871b005..cb2411a6 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm index 3c927bd9..eeb6f861 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, mgoubran@stanford.edu, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_voxelize_parallel.py b/miracl/seg/miracl_seg_voxelize_parallel.py index 12b747b9..b7eda0a4 100755 --- a/miracl/seg/miracl_seg_voxelize_parallel.py +++ b/miracl/seg/miracl_seg_voxelize_parallel.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2017, mgoubran@stanford.edu +# Maged Goubran @ Stanford 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_create_force_graph.py b/miracl/sta/miracl_sta_create_force_graph.py index de460049..4beb5098 100755 --- a/miracl/sta/miracl_sta_create_force_graph.py +++ b/miracl/sta/miracl_sta_create_force_graph.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu +# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_density.py b/miracl/sta/miracl_sta_gen_tract_density.py index 23cf034a..37a6e239 100755 --- a/miracl/sta/miracl_sta_gen_tract_density.py +++ b/miracl/sta/miracl_sta_gen_tract_density.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu +# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_endpoints.py b/miracl/sta/miracl_sta_gen_tract_endpoints.py index 5093c566..3feb2f6f 100644 --- a/miracl/sta/miracl_sta_gen_tract_endpoints.py +++ b/miracl/sta/miracl_sta_gen_tract_endpoints.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu +# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_track.py b/miracl/sta/miracl_sta_track.py index 2408b67c..c29e5a7f 100644 --- a/miracl/sta/miracl_sta_track.py +++ b/miracl/sta/miracl_sta_track.py @@ -60,7 +60,7 @@ def helpmsg(): (c) Qiyuan Tian @ Stanford University, 2016 qytian@stanford.edu (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- ''' diff --git a/miracl/sta/miracl_sta_track_primary_eigen.py b/miracl/sta/miracl_sta_track_primary_eigen.py index eda84bd5..f9a6ed61 100644 --- a/miracl/sta/miracl_sta_track_primary_eigen.py +++ b/miracl/sta/miracl_sta_track_primary_eigen.py @@ -54,7 +54,7 @@ def helpmsg(): (c) Qiyuan Tian @ Stanford University, 2016 qytian@stanford.edu (c) Maged Goubran @ Stanford University, 2016 - mgoubran@stanford.edu + maged.goubran@utoronto.ca ----------------------------------- ''' diff --git a/miracl/sta/sta_gui.py b/miracl/sta/sta_gui.py index 1f81e1e4..a2e66533 100755 --- a/miracl/sta/sta_gui.py +++ b/miracl/sta/sta_gui.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/stats/miracl_stats_paired_ttest_group.py b/miracl/stats/miracl_stats_paired_ttest_group.py index 2001de9c..a6b9ff80 100644 --- a/miracl/stats/miracl_stats_paired_ttest_group.py +++ b/miracl/stats/miracl_stats_paired_ttest_group.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py b/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py index 04e5b735..2f58b99d 100755 --- a/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py +++ b/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_create_brainmask.py b/miracl/utilfn/miracl_utilfn_create_brainmask.py index baedad23..b0145eec 100755 --- a/miracl/utilfn/miracl_utilfn_create_brainmask.py +++ b/miracl/utilfn/miracl_utilfn_create_brainmask.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_endstatement.py b/miracl/utilfn/miracl_utilfn_endstatement.py index 9a3a178a..7ac5a4c0 100755 --- a/miracl/utilfn/miracl_utilfn_endstatement.py +++ b/miracl/utilfn/miracl_utilfn_endstatement.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_extract_lbl.py b/miracl/utilfn/miracl_utilfn_extract_lbl.py index 2d572c89..73dafc48 100755 --- a/miracl/utilfn/miracl_utilfn_extract_lbl.py +++ b/miracl/utilfn/miracl_utilfn_extract_lbl.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, mgoubran@stanford.edu +# Maged Goubran @ 2016, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py b/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py index a376c254..827b6296 100755 --- a/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py +++ b/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, mgoubran@stanford.edu +# Maged Goubran @ 2017, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/setup.py b/setup.py index c8621f1d..4571763d 100755 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ version=version, description='General-purpose pipeline for MRI / CLARITY brain & connectivity analysis', author='Maged Goubran', - author_email='mgoubran@stanford.edu', + author_email='maged.goubran@utoronto.ca', packages=find_packages(), include_package_data=True, zip_safe=False, From e784f1c003af26f62377a28cfd81bb6e98d3fb9c Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 10:47:34 -0500 Subject: [PATCH 2/9] [fix] update copyright years 2016 to 2022 --- miracl/connect/miracl_connect_ROI_matrix_connectogram.py | 2 +- miracl/connect/miracl_connect_label_graph_proj_dens.py | 2 +- miracl/conv/miracl_conv_convertDCMtoNII.sh | 2 +- miracl/conv/miracl_conv_file_folder_gui.py | 2 +- miracl/conv/miracl_conv_gui_options.py | 2 +- miracl/deprec/miracl_analyze_particles_clarity_3D.ijm | 2 +- miracl/deprec/miracl_extract_clarity_features_wrapper.sh | 2 +- miracl/deprec/miracl_io_file_folder_gui_tkinter.py | 2 +- miracl/deprec/miracl_io_gui_options_pyqt.py | 2 +- miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py | 2 +- miracl/lbls/miracl_lbls_get_gp_volumes.py | 2 +- miracl/lbls/miracl_lbls_get_graph_info.py | 2 +- miracl/lbls/miracl_lbls_warp_to_clar_space.sh | 2 +- miracl/lbls/miracl_lbls_warp_to_mri_space.sh | 2 +- miracl/reg/miracl_reg_check_results.py | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm | 2 +- miracl/sta/miracl_sta_track.py | 4 ++-- miracl/sta/miracl_sta_track_primary_eigen.py | 4 ++-- miracl/stats/miracl_stats_paired_ttest_group.py | 2 +- miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py | 2 +- miracl/utilfn/miracl_utilfn_create_brainmask.py | 2 +- miracl/utilfn/miracl_utilfn_extract_lbl.py | 2 +- 22 files changed, 24 insertions(+), 24 deletions(-) diff --git a/miracl/connect/miracl_connect_ROI_matrix_connectogram.py b/miracl/connect/miracl_connect_ROI_matrix_connectogram.py index a3b903dc..26ff8634 100755 --- a/miracl/connect/miracl_connect_ROI_matrix_connectogram.py +++ b/miracl/connect/miracl_connect_ROI_matrix_connectogram.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/connect/miracl_connect_label_graph_proj_dens.py b/miracl/connect/miracl_connect_label_graph_proj_dens.py index a39647b9..4aab76af 100755 --- a/miracl/connect/miracl_connect_label_graph_proj_dens.py +++ b/miracl/connect/miracl_connect_label_graph_proj_dens.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_convertDCMtoNII.sh b/miracl/conv/miracl_conv_convertDCMtoNII.sh index 6b7096a3..d256f202 100755 --- a/miracl/conv/miracl_conv_convertDCMtoNII.sh +++ b/miracl/conv/miracl_conv_convertDCMtoNII.sh @@ -32,7 +32,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/conv/miracl_conv_file_folder_gui.py b/miracl/conv/miracl_conv_file_folder_gui.py index 511f5ecd..5c534250 100755 --- a/miracl/conv/miracl_conv_file_folder_gui.py +++ b/miracl/conv/miracl_conv_file_folder_gui.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_gui_options.py b/miracl/conv/miracl_conv_gui_options.py index a52f4d69..7da8a88d 100755 --- a/miracl/conv/miracl_conv_gui_options.py +++ b/miracl/conv/miracl_conv_gui_options.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm b/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm index 0a610d5c..29c1197f 100755 --- a/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm +++ b/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm @@ -4,7 +4,7 @@ // Extracts features from segmented clarity data using 3D partcile analysis // & summarizes the data per label (Allen atlas label) // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2016 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // dependencies: // diff --git a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh index 9a4a8b91..463f5073 100755 --- a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh +++ b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh @@ -54,7 +54,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/deprec/miracl_io_file_folder_gui_tkinter.py b/miracl/deprec/miracl_io_file_folder_gui_tkinter.py index 49c7938c..4aaddd8c 100755 --- a/miracl/deprec/miracl_io_file_folder_gui_tkinter.py +++ b/miracl/deprec/miracl_io_file_folder_gui_tkinter.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_io_gui_options_pyqt.py b/miracl/deprec/miracl_io_gui_options_pyqt.py index e8fc9379..81e83ff3 100755 --- a/miracl/deprec/miracl_io_gui_options_pyqt.py +++ b/miracl/deprec/miracl_io_gui_options_pyqt.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py b/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py index 464a8700..be51c132 100755 --- a/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py +++ b/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_get_gp_volumes.py b/miracl/lbls/miracl_lbls_get_gp_volumes.py index 3a68885c..b5adb6f3 100755 --- a/miracl/lbls/miracl_lbls_get_gp_volumes.py +++ b/miracl/lbls/miracl_lbls_get_gp_volumes.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_get_graph_info.py b/miracl/lbls/miracl_lbls_get_graph_info.py index a53fcd1f..fcf3e25f 100755 --- a/miracl/lbls/miracl_lbls_get_graph_info.py +++ b/miracl/lbls/miracl_lbls_get_graph_info.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh index 2e85a40b..43523c24 100755 --- a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh @@ -53,7 +53,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh index 651cade9..e7be3092 100755 --- a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh @@ -51,7 +51,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/reg/miracl_reg_check_results.py b/miracl/reg/miracl_reg_check_results.py index 813c6781..0a8274bc 100755 --- a/miracl/reg/miracl_reg_check_results.py +++ b/miracl/reg/miracl_reg_check_results.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm index d65043f5..141567de 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2016 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/sta/miracl_sta_track.py b/miracl/sta/miracl_sta_track.py index c29e5a7f..bf55661b 100644 --- a/miracl/sta/miracl_sta_track.py +++ b/miracl/sta/miracl_sta_track.py @@ -57,9 +57,9 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ Stanford University, 2016 + (c) Qiyuan Tian @ Stanford University, 2022 qytian@stanford.edu - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- ''' diff --git a/miracl/sta/miracl_sta_track_primary_eigen.py b/miracl/sta/miracl_sta_track_primary_eigen.py index f9a6ed61..9fa382e8 100644 --- a/miracl/sta/miracl_sta_track_primary_eigen.py +++ b/miracl/sta/miracl_sta_track_primary_eigen.py @@ -51,9 +51,9 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ Stanford University, 2016 + (c) Qiyuan Tian @ Stanford University, 2022 qytian@stanford.edu - (c) Maged Goubran @ Stanford University, 2016 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- ''' diff --git a/miracl/stats/miracl_stats_paired_ttest_group.py b/miracl/stats/miracl_stats_paired_ttest_group.py index a6b9ff80..d138b5ce 100644 --- a/miracl/stats/miracl_stats_paired_ttest_group.py +++ b/miracl/stats/miracl_stats_paired_ttest_group.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py b/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py index 2f58b99d..38fc4af8 100755 --- a/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py +++ b/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_create_brainmask.py b/miracl/utilfn/miracl_utilfn_create_brainmask.py index b0145eec..6d631e35 100755 --- a/miracl/utilfn/miracl_utilfn_create_brainmask.py +++ b/miracl/utilfn/miracl_utilfn_create_brainmask.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_extract_lbl.py b/miracl/utilfn/miracl_utilfn_extract_lbl.py index 73dafc48..4938746e 100755 --- a/miracl/utilfn/miracl_utilfn_extract_lbl.py +++ b/miracl/utilfn/miracl_utilfn_extract_lbl.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2016, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 From 440f5df360d1eb4c68f1f0c309788d5354188556 Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 10:53:03 -0500 Subject: [PATCH 3/9] [fix] update copyright years 2017 to 2022 --- miracl/connect/miracl_connect_csd_tractography.sh | 2 +- miracl/conv/miracl_conv_convertNIItoTIFF.py | 2 +- miracl/conv/miracl_conv_convertTIFFtoNII.py | 2 +- miracl/deprec/miracl_utils_int_corr_tiffs_2D.py | 2 +- miracl/lbls/miracl_lbls_generate_parents_at_depth.py | 2 +- miracl/miraclGUI.py | 2 +- miracl/seg/miracl_seg_feat_extract.py | 2 +- miracl/seg/miracl_seg_voxelize_parallel.py | 2 +- miracl/sta/sta_gui.py | 2 +- miracl/utilfn/miracl_utilfn_endstatement.py | 2 +- miracl/utilfn/miracl_utilfn_int_corr_tiffs.py | 2 +- 11 files changed, 11 insertions(+), 11 deletions(-) diff --git a/miracl/connect/miracl_connect_csd_tractography.sh b/miracl/connect/miracl_connect_csd_tractography.sh index f4ae00f2..6f8764b1 100755 --- a/miracl/connect/miracl_connect_csd_tractography.sh +++ b/miracl/connect/miracl_connect_csd_tractography.sh @@ -60,7 +60,7 @@ Optional arguments: ----------------------------------- - (c) Maged Goubran @ Stanford University, 2017 + (c) Maged Goubran @ Stanford University, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/conv/miracl_conv_convertNIItoTIFF.py b/miracl/conv/miracl_conv_convertNIItoTIFF.py index 1ebaef21..45828f21 100755 --- a/miracl/conv/miracl_conv_convertNIItoTIFF.py +++ b/miracl/conv/miracl_conv_convertNIItoTIFF.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/conv/miracl_conv_convertTIFFtoNII.py b/miracl/conv/miracl_conv_convertTIFFtoNII.py index 92051c4e..6ea1f4ca 100755 --- a/miracl/conv/miracl_conv_convertTIFFtoNII.py +++ b/miracl/conv/miracl_conv_convertTIFFtoNII.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py b/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py index 2e8d3ef6..0f3e2688 100755 --- a/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py +++ b/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/lbls/miracl_lbls_generate_parents_at_depth.py b/miracl/lbls/miracl_lbls_generate_parents_at_depth.py index 8472c8e7..3879568d 100755 --- a/miracl/lbls/miracl_lbls_generate_parents_at_depth.py +++ b/miracl/lbls/miracl_lbls_generate_parents_at_depth.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/miraclGUI.py b/miracl/miraclGUI.py index 0189ca97..46217095 100755 --- a/miracl/miraclGUI.py +++ b/miracl/miraclGUI.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_feat_extract.py b/miracl/seg/miracl_seg_feat_extract.py index 859db034..2ef9d574 100755 --- a/miracl/seg/miracl_seg_feat_extract.py +++ b/miracl/seg/miracl_seg_feat_extract.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_voxelize_parallel.py b/miracl/seg/miracl_seg_voxelize_parallel.py index b7eda0a4..541d9f13 100755 --- a/miracl/seg/miracl_seg_voxelize_parallel.py +++ b/miracl/seg/miracl_seg_voxelize_parallel.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2017, maged.goubran@utoronto.ca +# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/sta_gui.py b/miracl/sta/sta_gui.py index a2e66533..40fa5e34 100755 --- a/miracl/sta/sta_gui.py +++ b/miracl/sta/sta_gui.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_endstatement.py b/miracl/utilfn/miracl_utilfn_endstatement.py index 7ac5a4c0..d379802f 100755 --- a/miracl/utilfn/miracl_utilfn_endstatement.py +++ b/miracl/utilfn/miracl_utilfn_endstatement.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py b/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py index 827b6296..10ebf768 100755 --- a/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py +++ b/miracl/utilfn/miracl_utilfn_int_corr_tiffs.py @@ -1,5 +1,5 @@ #! /usr/bin/env python -# Maged Goubran @ 2017, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 From a924cb7a2f742984a0053551800c06829c15a72f Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:02:59 -0500 Subject: [PATCH 4/9] [fix] replace Stanford University with AICONSlab --- miracl/connect/miracl_connect_csd_tractography.sh | 2 +- miracl/conv/miracl_conv_convertDCMtoNII.sh | 2 +- miracl/deprec/miracl_extract_clarity_features_wrapper.sh | 2 +- miracl/lbls/miracl_lbls_warp_to_clar_space.sh | 2 +- miracl/lbls/miracl_lbls_warp_to_mri_space.sh | 2 +- miracl/sta/miracl_sta_track.py | 8 ++++---- miracl/sta/miracl_sta_track_primary_eigen.py | 4 ++-- 7 files changed, 11 insertions(+), 11 deletions(-) diff --git a/miracl/connect/miracl_connect_csd_tractography.sh b/miracl/connect/miracl_connect_csd_tractography.sh index 6f8764b1..7e6f5621 100755 --- a/miracl/connect/miracl_connect_csd_tractography.sh +++ b/miracl/connect/miracl_connect_csd_tractography.sh @@ -60,7 +60,7 @@ Optional arguments: ----------------------------------- - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/conv/miracl_conv_convertDCMtoNII.sh b/miracl/conv/miracl_conv_convertDCMtoNII.sh index d256f202..4462f4ed 100755 --- a/miracl/conv/miracl_conv_convertDCMtoNII.sh +++ b/miracl/conv/miracl_conv_convertDCMtoNII.sh @@ -32,7 +32,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh index 463f5073..d7a4a6af 100755 --- a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh +++ b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh @@ -54,7 +54,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh index 43523c24..b3112aec 100755 --- a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh @@ -53,7 +53,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh index e7be3092..8b6f71e5 100755 --- a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh +++ b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh @@ -51,7 +51,7 @@ function usage() ----------------------------------- - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- diff --git a/miracl/sta/miracl_sta_track.py b/miracl/sta/miracl_sta_track.py index bf55661b..bfbdcbd7 100644 --- a/miracl/sta/miracl_sta_track.py +++ b/miracl/sta/miracl_sta_track.py @@ -57,9 +57,9 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ Stanford University, 2022 + (c) Qiyuan Tian @ AICONSlab, 2022 qytian@stanford.edu - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- ''' @@ -103,7 +103,7 @@ def parse_inputs(parser, args): def doggen(sigma=None, X=None, Y=None, Z=None): """Function to generate derivative of Gaussian kernels, in 1D, 2D and 3D. - (c) Qiyuan Tian, McNab Lab, Stanford University, September 2015 + (c) Qiyuan Tian, McNab Lab, AICONSlab, September 2015 Args: sigma (): @@ -138,7 +138,7 @@ def doggen(sigma=None, X=None, Y=None, Z=None): def gaussgen(sigma): """ Function to generate Gaussian kernels, in 1D, 2D and 3D. - (c) Qiyuan Tian, McNab Lab, Stanford University, September 2015 + (c) Qiyuan Tian, McNab Lab, AICONSlab, September 2015 Args: sigma: diff --git a/miracl/sta/miracl_sta_track_primary_eigen.py b/miracl/sta/miracl_sta_track_primary_eigen.py index 9fa382e8..ee8cecf5 100644 --- a/miracl/sta/miracl_sta_track_primary_eigen.py +++ b/miracl/sta/miracl_sta_track_primary_eigen.py @@ -51,9 +51,9 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ Stanford University, 2022 + (c) Qiyuan Tian @ AICONSlab, 2022 qytian@stanford.edu - (c) Maged Goubran @ Stanford University, 2022 + (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca ----------------------------------- ''' From 80fc2c5980cf7df53747ed0be9d2fbdc02d5349f Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:09:51 -0500 Subject: [PATCH 5/9] [fix] update 2018 to 2022, BrainLab to AICONSlab --- docs/conf.py | 4 ++-- miracl/lbls/miracl_lbls_stats.py | 2 +- miracl/seg/miracl_seg_feats_cortex.py | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm | 2 +- miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm | 2 +- miracl/sta/miracl_sta_create_force_graph.py | 2 +- miracl/sta/miracl_sta_gen_tract_density.py | 2 +- miracl/sta/miracl_sta_gen_tract_endpoints.py | 2 +- 12 files changed, 13 insertions(+), 13 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 77e46508..8fad63ee 100755 --- a/docs/conf.py +++ b/docs/conf.py @@ -20,7 +20,7 @@ # -- Project information ----------------------------------------------------- project = 'MIRACL' -copyright = '2018, BrainLab' +copyright = '2022, AICONSlab' author = 'Maged Goubran' # The short X.Y version @@ -157,4 +157,4 @@ (master_doc, 'MIRACL', 'MIRACL Documentation', author, 'MIRACL', 'MIRACL is a general-purpose analysis pipeline', 'Science'), -] \ No newline at end of file +] diff --git a/miracl/lbls/miracl_lbls_stats.py b/miracl/lbls/miracl_lbls_stats.py index 4318a083..add339c7 100755 --- a/miracl/lbls/miracl_lbls_stats.py +++ b/miracl/lbls/miracl_lbls_stats.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca +# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_feats_cortex.py b/miracl/seg/miracl_seg_feats_cortex.py index 54bdfed5..d8a09f75 100755 --- a/miracl/seg/miracl_seg_feats_cortex.py +++ b/miracl/seg/miracl_seg_feats_cortex.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2018, maged.goubran@utoronto.ca +# Maged Goubran @ 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm index 4381e5f9..2c2e11b1 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments cFos positive nuclei in cleared mouse brain in 3D using CLARITY/iDISCO+ and immunolabelling // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // Newton Cho, newton.cho@epfl.ch, // Jordan Squair, jordansquair@gmail.com // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm index 1ad6e3a3..34f78384 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm index e174a408..4aad4223 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm index 58ed6ca2..e73d676c 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of sparse stains (like Thy1) in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm index cb2411a6..b737ceda 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm index eeb6f861..3b1f0227 100755 --- a/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm +++ b/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm @@ -3,7 +3,7 @@ // Macro for Fiji/ImageJ // Segments neurons in cleared mouse brain of virus stains in 3D // -// (c) Maged Goubran, maged.goubran@utoronto.ca, 2018 +// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022 // // based on plugins from: // diff --git a/miracl/sta/miracl_sta_create_force_graph.py b/miracl/sta/miracl_sta_create_force_graph.py index 4beb5098..394c5d61 100755 --- a/miracl/sta/miracl_sta_create_force_graph.py +++ b/miracl/sta/miracl_sta_create_force_graph.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca +# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_density.py b/miracl/sta/miracl_sta_gen_tract_density.py index 37a6e239..faea22a0 100755 --- a/miracl/sta/miracl_sta_gen_tract_density.py +++ b/miracl/sta/miracl_sta_gen_tract_density.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca +# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_endpoints.py b/miracl/sta/miracl_sta_gen_tract_endpoints.py index 3feb2f6f..7c3e2340 100644 --- a/miracl/sta/miracl_sta_gen_tract_endpoints.py +++ b/miracl/sta/miracl_sta_gen_tract_endpoints.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2018, maged.goubran@utoronto.ca +# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca # coding: utf-8 From 441c364653966da7273c3c9062b564184b7d05bd Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:13:47 -0500 Subject: [PATCH 6/9] [fix] update copyright years 2019 to 2022 --- README.md | 2 +- miracl/stats/miracl_stats_voxel_wise.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index c273b2a5..4f2b0d33 100755 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ is a general-purpose, open-source pipeline for automated: 6) Statistical analysis of CLARITY & Imaging data 7) Atlas generation & Label manipulation -Copyright (c) 2019 Maged Goubran, maged.goubran@utoronto.ca +Copyright (c) 2022 Maged Goubran, maged.goubran@utoronto.ca All Rights Reserved. diff --git a/miracl/stats/miracl_stats_voxel_wise.py b/miracl/stats/miracl_stats_voxel_wise.py index 69a04da3..85df1944 100755 --- a/miracl/stats/miracl_stats_voxel_wise.py +++ b/miracl/stats/miracl_stats_voxel_wise.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ 2019, maged.goubran@sri.utoronto.ca +# Maged Goubran @ 2022, maged.goubran@sri.utoronto.ca # coding: utf-8 From 53f13f2b9a9aacb07ceac97ffc43aaf55618d233 Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:18:33 -0500 Subject: [PATCH 7/9] [fix] replace Stanford with AICONSlab --- miracl/lbls/miracl_lbls_stats.py | 2 +- miracl/seg/miracl_seg_voxelize_parallel.py | 2 +- miracl/sta/miracl_sta_create_force_graph.py | 2 +- miracl/sta/miracl_sta_gen_tract_density.py | 2 +- miracl/sta/miracl_sta_gen_tract_endpoints.py | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/miracl/lbls/miracl_lbls_stats.py b/miracl/lbls/miracl_lbls_stats.py index add339c7..9a02cb0b 100755 --- a/miracl/lbls/miracl_lbls_stats.py +++ b/miracl/lbls/miracl_lbls_stats.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca +# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/seg/miracl_seg_voxelize_parallel.py b/miracl/seg/miracl_seg_voxelize_parallel.py index 541d9f13..b88eccda 100755 --- a/miracl/seg/miracl_seg_voxelize_parallel.py +++ b/miracl/seg/miracl_seg_voxelize_parallel.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca +# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_create_force_graph.py b/miracl/sta/miracl_sta_create_force_graph.py index 394c5d61..5afcf511 100755 --- a/miracl/sta/miracl_sta_create_force_graph.py +++ b/miracl/sta/miracl_sta_create_force_graph.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca +# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_density.py b/miracl/sta/miracl_sta_gen_tract_density.py index faea22a0..060f16a0 100755 --- a/miracl/sta/miracl_sta_gen_tract_density.py +++ b/miracl/sta/miracl_sta_gen_tract_density.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca +# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca # coding: utf-8 diff --git a/miracl/sta/miracl_sta_gen_tract_endpoints.py b/miracl/sta/miracl_sta_gen_tract_endpoints.py index 7c3e2340..66d8c9be 100644 --- a/miracl/sta/miracl_sta_gen_tract_endpoints.py +++ b/miracl/sta/miracl_sta_gen_tract_endpoints.py @@ -1,5 +1,5 @@ #!/usr/bin/env python -# Maged Goubran @ Stanford 2022, maged.goubran@utoronto.ca +# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca # coding: utf-8 From deae46849567a4e74fb5550ebad185e88e9a55b0 Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:26:03 -0500 Subject: [PATCH 8/9] [fix] correct erroneously replaced yrs/institutes --- miracl/sta/miracl_sta_track.py | 8 ++++---- miracl/sta/miracl_sta_track_primary_eigen.py | 4 ++-- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/miracl/sta/miracl_sta_track.py b/miracl/sta/miracl_sta_track.py index bfbdcbd7..f7a9ebc6 100644 --- a/miracl/sta/miracl_sta_track.py +++ b/miracl/sta/miracl_sta_track.py @@ -57,7 +57,7 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ AICONSlab, 2022 + (c) Qiyuan Tian @ Stanford University, 2016 qytian@stanford.edu (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca @@ -103,7 +103,7 @@ def parse_inputs(parser, args): def doggen(sigma=None, X=None, Y=None, Z=None): """Function to generate derivative of Gaussian kernels, in 1D, 2D and 3D. - (c) Qiyuan Tian, McNab Lab, AICONSlab, September 2015 + (c) Qiyuan Tian, McNab Lab, Stanford University, September 2015 Args: sigma (): @@ -138,7 +138,7 @@ def doggen(sigma=None, X=None, Y=None, Z=None): def gaussgen(sigma): """ Function to generate Gaussian kernels, in 1D, 2D and 3D. - (c) Qiyuan Tian, McNab Lab, AICONSlab, September 2015 + (c) Qiyuan Tian, McNab Lab, Stanford University, September 2015 Args: sigma: @@ -355,4 +355,4 @@ def main(args): if __name__ == "__main__": - main(sys.argv) \ No newline at end of file + main(sys.argv) diff --git a/miracl/sta/miracl_sta_track_primary_eigen.py b/miracl/sta/miracl_sta_track_primary_eigen.py index ee8cecf5..391c728a 100644 --- a/miracl/sta/miracl_sta_track_primary_eigen.py +++ b/miracl/sta/miracl_sta_track_primary_eigen.py @@ -51,7 +51,7 @@ def helpmsg(): - Diffusion Toolkit ----------------------------------- - (c) Qiyuan Tian @ AICONSlab, 2022 + (c) Qiyuan Tian @ Stanford University, 2016 qytian@stanford.edu (c) Maged Goubran @ AICONSlab, 2022 maged.goubran@utoronto.ca @@ -131,4 +131,4 @@ def main(args): if __name__ == "__main__": - main(sys.argv) \ No newline at end of file + main(sys.argv) From 08428ec677b151185b02a9aa54353c5593e33164 Mon Sep 17 00:00:00 2001 From: Jonas Osmann Date: Tue, 8 Nov 2022 11:30:53 -0500 Subject: [PATCH 9/9] [fix] replace copyright years missed with sed --- docs/index.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/index.rst b/docs/index.rst index 3e8643a1..0b29b4c2 100755 --- a/docs/index.rst +++ b/docs/index.rst @@ -23,7 +23,7 @@ MIRACL (Multi-modal Image Registration And Connectivity anaLysis) is a general-p 6) Statistical analysis of CLARITY & Imaging data 7) Atlas generation & Label manipulation -Copyright (c) 2019 Maged Goubran, maged.goubran@utoronto.ca +Copyright (c) 2022 Maged Goubran, maged.goubran@utoronto.ca All Rights Reserved.