Spack Components for OM3

packages/access-cice/package.py

@@ -0,0 +1,66 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: Apache-2.0
+# ----------------------------------------------------------------------------
+
+from spack.package import *
+
+
+class AccessCice(CMakePackage):
+    """CICE is a computationally efficient model for simulating the growth, melting, 
+    and movement of polar sea ice. CICE is maintained and developed by the CICE-Consortium. 
+    This package builds using the Access3Share common libraries for ACCESS 3 models."""
+
+    homepage = "https://github.com/CICE-Consortium/CICE"
+    url = "https://github.com/CICE-Consortium/CICE/archive/refs/tags/CICE6.6.0.tar.gz"
+    version("6.6.0", md5="1c678c0af67bf09f92c0a861344c3a92")
+    git = "https://github.com/ACCESS-NRI/CICE"
+    submodules = True
+    maintainers = ["anton-seaice", "harshula"]
+
+    # see license file in at https://github.com/CICE-Consortium/CICE
+    license("LicenseRef-CICE", checked_by="anton-seaice")
+
+    # variant("openmp", default=False, description="Enable OpenMP")
+    variant("cesmcoupled", default=False, description="Set CESMCOUPLED CPP Flag")
+    variant("access3", default=True, description="Install CICE as library for Access3 models") 
+
+    variant("io_type", 
+        default="NetCDF",
+        values=("NetCDF", "PIO", "Binary"),
+        description="CICE IO Method"
+    )
+
+    variant(
+        "build_type",
+        default="Release",
+        description="The build type to build",
+        values=("Debug", "Release"),
+    )
+
+    depends_on("access3-share", when="+access3") 
+    # depends_on("access3-share+openmp", when="+openmp+access3")
+
+    depends_on("cmake@3.18:", type="build")
+    depends_on("mpi")
+    depends_on("netcdf-fortran@4.6.0:", when="io_type=NetCDF")
+    depends_on("parallelio@2.5.10: build_type==RelWithDebInfo", when="io_type=PIO")
+    depends_on("parallelio fflags='-qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source' cflags='-qno-opt-dynamic-align -fp-model precise -std=gnu99'", when="%intel io_type=PIO")
+
+    root_cmakelists_dir = "configurations/scripts/cmake"
+
+    def cmake_args(self):
+        args = [
+            self.define_from_variant("CICE_IO", "io_type"),
+            # self.define_from_variant("OPENMP", "openmp"),
+            self.define_from_variant("CESMCOUPLED", "cesmcoupled"),
+            self.define_from_variant("ACCESS3_CICE", "access3")
+        ]
+
+        # we need this for cmake to find MPI_Fortran
+        args.append(self.define("CMAKE_C_COMPILER", self.spec["mpi"].mpicc))
+        args.append(self.define("CMAKE_CXX_COMPILER", self.spec["mpi"].mpicxx))
+        args.append(self.define("CMAKE_Fortran_COMPILER", self.spec["mpi"].mpifc))
+
+        return args

packages/access-mom6/package.py

@@ -0,0 +1,62 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: Apache-2.0
+# ----------------------------------------------------------------------------
+
+from spack.package import CMakePackage, variant, version, depends_on
+
+
+class AccessMom6(CMakePackage):
+    """The Modular Ocean Model (MOM) describes the numerical ocean models originating from NOAA/GFDL. 
+    They are used to simulate ocean currents at both regional and global scales, 
+    enabling scientists to answer fundamental questions about the role of the ocean in the dynamics of the global climate.
+    This package builds using the Access3Share common libraries for ACCESS 3 models."""
+
+    homepage = "https://github.com/ACCESS-NRI"
+    git = "https://github.com/ACCESS-NRI/MOM6.git"
+    submodules = True
+    url = "https://github.com/ACCESS-NRI/MOM6.git"
+
+    version("cmake_build",
+            git="https://github.com/ACCESS-NRI/MOM6.git",
+            branch="cmake_build",
+            submodules=True,
+            preferred=True,
+            )
+    maintainers = ["minghangli-uni", "harshula"]
+
+    # see license file in https://github.com/ACCESS-NRI/MOM6/blob/e92c971084e185cfd3902f18072320b45d583a54/LICENSE.md
+    license("LGPL-3.0", checked_by="minghangli-uni")
+
+    root_cmakelists_dir = "cmake"
+
+    variant("openmp", default=False, description="Enable OpenMP")
+    variant("mom_symmetric", default=True, description="Use symmetric memory in MOM6")
+    variant("access3", default=True, description="Building MOM6 library with Access3share")
+    variant("cesmcoupled", default=False, description="Enable parameters with cesm coupled")
+
+    depends_on("access3-share", when="+access3")
+    depends_on("cmake@3.18:", type="build")
+    depends_on("mpi")
+    depends_on("netcdf-fortran@4.6.0:")
+    depends_on("fms@2021.03: build_type==RelWithDebInfo precision=64 +large_file ~gfs_phys ~quad_precision")
+    depends_on("fms +openmp", when="+openmp")
+    depends_on("fms ~openmp", when="~openmp")
+
+
+    root_cmakelists_dir = "cmake"
+
+    def cmake_args(self):
+        args = [
+            self.define_from_variant("OPENMP", "openmp"),
+            self.define_from_variant("ENABLE_MOM_SYMMETRIC", "mom_symmetric"),
+            self.define_from_variant("ENABLE_ACCESS_MOM6", "access3"),
+            self.define_from_variant("ENABLE_CESMCOUPLED", "cesmcoupled"),
+        ]
+
+        args.append(self.define("CMAKE_C_COMPILER", self.spec["mpi"].mpicc))
+        args.append(self.define("CMAKE_CXX_COMPILER", self.spec["mpi"].mpicxx))
+        args.append(self.define("CMAKE_Fortran_COMPILER", self.spec["mpi"].mpifc))
+
+        return args

packages/access-om3/package.py

@@ -25,4 +25,4 @@ class AccessOm3(BundlePackage):
 
     version("latest")
 
-    depends_on("access-om3-nuopc")
+    depends_on("access3-exe")

packages/access3-exe/package.py

@@ -0,0 +1,88 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: Apache-2.0 
+
+from spack.package import *
+
+
+class Access3Exe(CMakePackage):
+    """Executable build for ACCESS version 3 climate models. The exectuable is defined in Community Mediator for Earth Prediction 
+    Systems (CMEPS). Currently implemented for ACCESS-OM3, and in the future may support ACCESS-CM3 and ACCESS-ESM3. This is a 
+    companion pacakge to Access3Share which builds the shared libraries."""
+
+    homepage = "https://github.com/ACCESS-NRI/access3-share"
+    git = "https://github.com/ACCESS-NRI/access3-share"
+    submodules = True
+    maintainers = ["anton-seaice", "harshula", "micaeljtoliveira"]
+
+    license("Apache-2.0", checked_by="anton-seaice")
+
+    variant(
+        "build_type",
+        default="Release",
+        description="The build type to build",
+        values=("Debug", "Release"),
+    )
+
+    # To-DO: confirm if we want a MOM6 only for regional modelling
+    variant(
+        "configurations",
+        # default="MOM6-CICE6, CICE6-WW3, MOM6-CICE6-WW3", if we set these defaults there is no way to unset them in the deployment
+        default="CICE6",
+        values=(
+            "MOM6",
+            "CICE6",
+            "WW3",
+            "MOM6-WW3",
+            "MOM6-CICE6",
+            "CICE6-WW3",
+            "MOM6-CICE6-WW3",
+        ),
+        multi=True,
+        description="ACCESS-OM3 configurations to build",
+    )
+
+    variant("openmp", default=False, description="Enable OpenMP")
+
+    depends_on("cmake@3.18:", type="build")
+    depends_on("mpi")
+    depends_on("access-cice+cesmcoupled+access3")
+    depends_on("access-mom6+cesmcoupled+access3")
+    # depends_on("access-ww3 driver=nuopc/cmeps +cesmcoupled")
+
+    flag_handler = CMakePackage.build_system_flags
+
+    def cmake_args(self):
+
+        args = [
+            self.define_from_variant("OPENMP", "openmp"),
+            self.define(
+                "ENABLE_MOM6", "configurations=MOM6" in self.spec
+            ),
+            self.define(
+                "ENABLE_CICE6", "configurations=CICE6" in self.spec
+            ),
+            self.define(
+                "ENABLE_WW3", "configurations=WW3" in self.spec
+            ),
+            self.define(
+                "ENABLE_MOM6-WW3", "configurations=MOM6-WW3" in self.spec
+            ),
+            self.define(
+                "ENABLE_MOM6-CICE6", "configurations=MOM6-CICE6" in self.spec
+            ),
+            self.define(
+                "ENABLE_CICE6-WW3", "configurations=CICE6-WW3" in self.spec
+            ),
+            self.define(
+                "ENABLE_MOM6-CICE6-WW3", "configurations=MOM6-CICE6-WW3" in self.spec
+            ),
+        ]
+
+        # we need this for cmake to find MPI_Fortran
+        args.append(self.define("CMAKE_C_COMPILER", self.spec["mpi"].mpicc))
+        args.append(self.define("CMAKE_CXX_COMPILER", self.spec["mpi"].mpicxx))
+        args.append(self.define("CMAKE_Fortran_COMPILER", self.spec["mpi"].mpifc))
+
+        return args

packages/access3-share/package.py

@@ -0,0 +1,55 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+from spack.package import *
+
+
+class Access3Share(CMakePackage):
+    """Shared coupler/mediator libraries used by the ACCESS version 3 climate models. This 
+    package includes the Community Mediator for Earth Prediction Systems (CMEPS) and Community 
+    Data models for Earth Prediction Systems (CDEPS) as used in ACCESS-OM3 (and the future 
+    ACCESS-CM3 and ACCESS-ESM3 etc). See Access3Exe package to produce executable programs."""
+
+    homepage = "https://github.com/ACCESS-NRI/access3-share"
+    git = "https://github.com/ACCESS-NRI/access3-share"
+    submodules = True
+    maintainers = ["anton-seaice", "harshula", "micaeljtoliveira"]
+
+    license("Apache-2.0", checked_by="anton-seaice")
+
+    # variant("openmp", default=False, description="Enable OpenMP")
+
+    variant(
+        "build_type",
+        default="Release",
+        description="The build type to build",
+        values=("Debug", "Release"),
+    )
+
+    depends_on("cmake@3.18:", type="build")
+    depends_on("mpi")
+    depends_on("netcdf-fortran@4.6.0:")
+    depends_on("esmf@8.3.0:")
+    depends_on("esmf cflags='-fp-model precise' fflags='-fp-model precise'", when="%intel")
+    depends_on("fortranxml@4.1.2:")
+
+    depends_on("parallelio@2.5.10: build_type==RelWithDebInfo")
+    depends_on("parallelio fflags='-qno-opt-dynamic-align -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source' cflags='-qno-opt-dynamic-align -fp-model precise -std=gnu99'", when="%intel")
+
+    flag_handler = CMakePackage.build_system_flags
+
+    def cmake_args(self):
+
+        args = [
+            self.define("ACCESS3_LIB_INSTALL", True),
+            # self.define_from_variant("OPENMP", "openmp"),
+        ]
+
+        # we need this for cmake to find MPI_Fortran
+        args.append(self.define("CMAKE_C_COMPILER", self.spec["mpi"].mpicc))
+        args.append(self.define("CMAKE_CXX_COMPILER", self.spec["mpi"].mpicxx))
+        args.append(self.define("CMAKE_Fortran_COMPILER", self.spec["mpi"].mpifc))
+
+        return args