gadi_deploy.yml

name: Update catalog on Gadi
on:
  workflow_dispatch:
    inputs:
      release_version:
        description: 'Release version'     
        required: true

jobs:
  build:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        ### Latest at time of writing
        uses: actions/checkout@v3.3.0
      - name: Sync repository to Gadi
        ### Latest at time of writing
        uses: up9cloud/action-rsync@v1.3
        env:
          HOST: gadi.nci.org.au
          TARGET: ${{secrets.GADI_REPO_PATH}}
          KEY: ${{secrets.DEPLOY_KEY}}
          USER: ${{secrets.GADI_USER}}
      - name: Update catalog
        uses: appleboy/ssh-action@v0.1.7
        with:
          host: gadi.nci.org.au
          username: ${{secrets.GADI_USER}}
          key: ${{secrets.DEPLOY_KEY}}
          script: |
            cd ${{secrets.GADI_REPO_PATH}}
            export RELEASE=${{ github.event.inputs.release_version }}
            cd bin
            qsub -v version=${RELEASE} build_all.sh
            cd ..
            git add src/access_nri_intake/cat
            git commit "Update catalog to $RELEASE"