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UCL
- London, UK
- https://www.researchgate.net/profile/Ahmed_Alhendi/
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SCP Public
Forked from zhanghao-njmu/SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
R GNU General Public License v3.0 UpdatedDec 21, 2023 -
rnaseqshort Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedSep 5, 2023 -
ParallelGDDetect Public
Forked from amf71/ParallelGDDetectA package to detect distinct genome doubling events which have occurred in different samples from the same tumour
R UpdatedAug 12, 2023 -
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cellxgene_VIP Public
Forked from interactivereport/cellxgene_VIPEnables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…
HTML MIT License UpdatedMar 6, 2023 -
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PhylogicNDT_Docker Public
PhylogicNDT dockcer for clonal evolution analysis
Shell UpdatedOct 27, 2022 -
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tfjs-web-app Public
Forked from IBM/tfjs-web-appA TensorFlow.js Progressive Web App for Offline Visual Recognition
JavaScript Apache License 2.0 UpdatedJun 1, 2022 -
ABSOLUTE Public
Forked from getzlab/ABSOLUTEABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38
R BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2022 -
pipeline-v5 Public
Forked from EBI-Metagenomics/pipeline-v5This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
HTML Apache License 2.0 UpdatedMar 24, 2022 -
htseq-merge Public
R script for combine HTSeq outputs into one read count matrix in R
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scRNAseq_analysis_vignette Public
Forked from quadbio/scRNAseq_analysis_vignetteTutorial for scRNA-seq data analysis beginners using R
UpdatedDec 12, 2021 -
ezASCAT Public
Forked from CompEpigen/ezASCATConveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
R Other UpdatedDec 6, 2021 -
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SPICE-pipeline-CWL Public
Forked from demichelislab/SPICE-pipeline-CWLFramework for allele specific analysis of matched tumor and normal next generation sequencing data (CWL version)
Common Workflow Language UpdatedAug 26, 2021 -
DoAbsolute Public
Forked from ShixiangWang/DoAbsolute📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package
R Other UpdatedAug 23, 2021 -
install_GISTIC Public
Forked from ShixiangWang/install_GISTICInstall GISTIC2 by one line code; GISTIC2 docker image
Shell MIT License UpdatedAug 9, 2021 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedJul 19, 2021 -
countToFPKM Public
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
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scRNAseq_course Public
Forked from GKild/scRNAseq_courseEMBL-EBI single cell RNA-seq analysis in R course practicals
HTML UpdatedFeb 3, 2021 -
genomics Public
Forked from sschmeier/genomicsSphinx documentation source for a computational genomics tutorial.
HTML MIT License UpdatedDec 25, 2020 -
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dockstore-cgpwgs Public
Forked from cancerit/dockstore-cgpwgsDockstore implementation of CGP core WGS analysis
Shell GNU Affero General Public License v3.0 UpdatedJun 8, 2020 -
PythonCourses Public
Forked from UniOfLeicester/PythonCoursesLearning to Program via Python, and Scientific Python for Programmers course material
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pipeliner Public
Forked from montilab/pipelinerA flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Nextflow GNU General Public License v3.0 UpdatedNov 7, 2019 -
maftools Public
Forked from PoisonAlien/maftoolsSummarize, Analyze and Visualize MAF files from TCGA or in house studies.
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