Update signature of log function in FLCRateStatistic for v2.5 compati…

…bility. Update citation of FLC model.
4ment · Oct 25, 2018 · f3f20ab · f3f20ab
1 parent b76904e
commit f3f20ab
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/src/mf/beast/evolution/branchratemodel/FLCRateStatistic.java b/src/mf/beast/evolution/branchratemodel/FLCRateStatistic.java
@@ -61,7 +61,7 @@ public void init(final PrintStream out) {
 
 
     @Override
-    public void log(final int sample, final PrintStream out) {
+    public void log(final long sample, final PrintStream out) {
         super.log(sample, out);
 
         for (int i = 0; i < rates.size(); i++){

diff --git a/src/mf/beast/evolution/branchratemodel/FlexibleLocalClockModel.java b/src/mf/beast/evolution/branchratemodel/FlexibleLocalClockModel.java
@@ -16,7 +16,8 @@
 
 // TreeLikelihood contains a reference to a abstract BranchRateModel.Base object as input, not a BranchModel interface
 @Description("Defines a flexible local clock model.")
-@Citation(value = "Fourment M and Darling A (2017) title", DOI = "", year = 2017, firstAuthorSurname = "fourment")
+@Citation(value = "Fourment M and Darling AE (2018) Local and relaxed clocks: the best of both worlds\n" +
+                "  PeerJ 6:e5140", DOI = "10.7717/peerj.5140", year = 2018, firstAuthorSurname = "fourment")
 public class FlexibleLocalClockModel extends BranchRateModel.Base {//CalculationNode implements BranchRateModel {
 
     public Input<LineageRateModel> rootRateModelInput = new Input<LineageRateModel>("rootClockModel", "the branch rate model for branchs that do not belong to a local clock.", Input.Validate.REQUIRED);