pyproject.toml

# Written by Carl Vitzthum with help from Soo Lee
# This code was originally based off of the straw project by Neva C. Durand and
# Yue Wu (https://github.com/theaidenlab/straw). The cooler file writing was
# based off of much of the CLI code contained in this
# repo: https://github.com/mirnylab/cooler.

[tool.poetry]
name = "hic2cool"
version = "1.0.1"
description = """Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler).  Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion."""
authors = ["Carl Vitzthum <carl.vitzthum@gmail.com>"]
license = "MIT"
readme = "README.md"
repository = "https://github.com/4dn-dcic/hic2cool/"
keywords = ["bioinformatics", "genomics", "hi-c", "juicer", "cooler", "contact-matrix", "file-format"]
classifiers = [
    "Programming Language :: Python :: 3",
    "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]
include = []
packages = [
    { include="hic2cool", from="." }
]

[tool.poetry.dependencies]
python = ">=3.8,<3.10"
numpy = ">=1.9"
scipy = ">=1.10.1"
pandas = ">=1.0"
h5py = ">=2.5.0"
cooler = "0.9.3"


[tool.poetry.plugins]

[tool.poetry.plugins.console_scripts]
    "hic2cool" = "hic2cool.__main__:main"

[build-system]
requires = ["poetry_core>=1.0.0"]
build-backend = "poetry.core.masonry.api"