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updated readme
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SooLee committed Apr 5, 2017
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Expand Up @@ -78,7 +78,7 @@ sc2 second sequence (chromosome) column index (1-based). Zero (0) means not spec
* `line_skip` : number of lines to skip in the beginning. (default 0)
* `force` : If TRUE, overwrite existing index file. If FALSE, do not overwrite unless the index file is older than the bgzipped file. (default FALSE)
* An index file sometextfile.gz.px2 will be created.
* When neither `preset` nor `sc`(and `bc`) is given, the following file extensions are automatically recognized: `gff.gz`, `bed.gz`, `sam.gz`, `vcf.gz`, `psltbl.gz` (1D-indexing), `pairs.gz` (2D-indexing).
* When neither `preset` nor `sc`(and `bc`) is given, the following file extensions are automatically recognized: `gff.gz`, `bed.gz`, `sam.gz`, `vcf.gz`, `psltbl.gz` (1D-indexing), and `pairs.gz` (2D-indexing).

### Querying
```
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## Version history
### 0.1.1
* `px_build_index`: When neither preset nor custom set of columns is given, file extensions automatically recognized for indexing.
* `px_build_index`: When neither `preset` nor a custom set of columns is given, file extensions are automatically recognized for indexing.

### 0.1.0
* `px_build_index` is added. (Now indexing can be done using Rpairix as well as querying.)
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